Gene Information

Name : Sbal175_0429 (Sbal175_0429)
Accession : YP_006019030.1
Strain : Shewanella baltica BA175
Genome accession: NC_017571
Putative virulence/resistance : Virulence
Product : Fis family sigma-54 specific transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 497765 - 499066 bp
Length : 1302 bp
Strand : +
Note : KEGG: shw:Sputw3181_0461 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core

DNA sequence : 
GTGGGCGGCCTAAGTATACGGATTGAAGGATTAAACATATCTGCGGAACTTGCATGCACAATCGCACAGGAAGATTTTTA
TCTGTGGAATGATGCAATGGAATCGCCTTGGCTCACGATCGTTAACTTATCAGATTGTCGTCCTTGTGATGTAAAATCTT
ATCTTGCCCGTTTTCCTTGCCGTAATATTGTCGCGTTATTAGCGCCAGAACAAGGTGAGTTAGCCGCGGCGGCAATGCGT
GCTGGTGTACAAGATTATCTATTAATTCCCGTAGAAACCGAGCAACTGCTAGCCTCAATTCAGCGTTTACGCCGTTTAGA
GTTACCTGATTCTAGTTTGGTTGTATCGGCTGCTGTTAGCCGGCAATTATTGATGTTGGCCCATAGGGCTGCAACCACTG
AGGCCAGTGTTTTATTATTGGGTGAAAGTGGTACCGGCAAGGAGCCGCTTGCTCGTTATATTCATCGTCATTCTTCTCGT
TCTCATAAGCCTTTCGTTGCGATTAACTGTGCCGCCATCCCTGAAAGTATTCTTGAATCTGTCTTATTTGGTCATGTTAA
AGGCGCCTTTACTGGTGCTATTTGCGATAAAGCAGGCAAATTTGAGCAGGCAAATGGCGGCACTTTATTACTCGATGAAA
TTGGTGAAATGCCCTTGCCGTTGCAGGCAAAATTACTCCGAGTGTTACAGGAGCGTGAAGTCGAAAGACTCGGCGGGCAG
CATGCTATTCCACTGGATATCAGAATCATTGCCTCTACCAATCGCGACTTAAGACAGGCCGTTGAGTTTGGGCATTTTAG
GGAGGATCTGTTCTACCGTTTAGATGTTTTGCCTTTAAAAATCGCGCCTTTAAGAGAACGTAAGGCTGACATCCTCCCTT
TAGCTGAGCATTTCTTAGGTTTATATGGTCAGTCCGATAACGCAAGTCGTTGCTATTTCAGTGAGCACGCAAGGCAAGTG
CTTGTTACCTATGATTGGCCGGGAAATGTTAGAGAGCTAGAAAATTGTATTCAGCGGGCATTAGTGATGCGCAGAGGTCA
GGCTATTCAAGTTGCTGAACTCGGATTAAACATTCAAGAAGAAACGCTCGAGTTAGAGCCTTTGGGCGCGACGGAAGGAC
TTAAAGCTTCAAAACAGCAGGCAGAATTTCAATATATTATTGATGTACTTAAACGTTTTAATGGACAACGCACTTTAAGT
GCGCAGGCGCTAGGGATGACGACTAGAGCCTTAAGATATCGCCTCGTGCAAATGCGAGAAGCAGGGATTGATATTGAAAC
GTTATTAGATCAAGCAGCGTGA

Protein sequence : 
MGGLSIRIEGLNISAELACTIAQEDFYLWNDAMESPWLTIVNLSDCRPCDVKSYLARFPCRNIVALLAPEQGELAAAAMR
AGVQDYLLIPVETEQLLASIQRLRRLELPDSSLVVSAAVSRQLLMLAHRAATTEASVLLLGESGTGKEPLARYIHRHSSR
SHKPFVAINCAAIPESILESVLFGHVKGAFTGAICDKAGKFEQANGGTLLLDEIGEMPLPLQAKLLRVLQEREVERLGGQ
HAIPLDIRIIASTNRDLRQAVEFGHFREDLFYRLDVLPLKIAPLRERKADILPLAEHFLGLYGQSDNASRCYFSEHARQV
LVTYDWPGNVRELENCIQRALVMRRGQAIQVAELGLNIQEETLELEPLGATEGLKASKQQAEFQYIIDVLKRFNGQRTLS
AQALGMTTRALRYRLVQMREAGIDIETLLDQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 1e-40 42
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 3e-42 41
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 3e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal175_0429 YP_006019030.1 Fis family sigma-54 specific transcriptional regulator BAC0467 Protein 1e-62 42
Sbal175_0429 YP_006019030.1 Fis family sigma-54 specific transcriptional regulator BAC0089 Protein 4e-56 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal175_0429 YP_006019030.1 Fis family sigma-54 specific transcriptional regulator VFG1249 Protein 9e-79 49