Gene Information

Name : Sbal175_2414 (Sbal175_2414)
Accession : YP_006020971.1
Strain : Shewanella baltica BA175
Genome accession: NC_017571
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2859037 - 2859507 bp
Length : 471 bp
Strand : -
Note : TIGRFAM: Type III secretion system, low calcium response, chaperone LcrH/SycD; KEGG: svo:SVI_2254 type III secretion system chaperone, SycD family

DNA sequence : 
ATGAAACAGCAAGAATTTGAAGTCATTGAACATTTTCTGCAACGGGGCGGCTCACTGCGTATGTTGGCTGATGTCGAGCA
AAGTGACTTGAATGTGCTGTACCAATACGCGTTGCAGTTAATGGCCTGCCGAGACCAACAGGGGGCGAAGCGGATCTTTT
ACCTCTTGATGCGCATAGATCAATGGAATTACGACTACTGCTTTTCTCTAGGGATATGCTGCCAGCAGTTACACGAACAT
GAAGAGGCCATTTTCTGTTTGGGCCGGGCAGGGATGATCAAAGTCGATAATCCTTTACCCGCTTACCATGCTGGTTTGAG
CTACTTGGCTTTGGGCAACCACGACTATGCCAAGAGAAGCTTTAACGCCAGTCTACGTTGGTGTGAAGGCCACCCAGAGA
GCACTGGGATCGCCGCCAGTGCACAGCGCGGACTGGCCACACTCGCGAAGGAGAATTCCCATGTCAATTAA

Protein sequence : 
MKQQEFEVIEHFLQRGGSLRMLADVEQSDLNVLYQYALQLMACRDQQGAKRIFYLLMRIDQWNYDYCFSLGICCQQLHEH
EEAIFCLGRAGMIKVDNPLPAYHAGLSYLALGNHDYAKRSFNASLRWCEGHPESTGIAASAQRGLATLAKENSHVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 1e-19 43
sscA CAA12186.1 SscA Virulence SPI-2 Protein 1e-19 43
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 3e-19 43
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 2e-19 43
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 2e-19 42
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 2e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal175_2414 YP_006020971.1 type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 5e-20 43