Gene Information

Name : Sbal175_2389 (Sbal175_2389)
Accession : YP_006020946.1
Strain : Shewanella baltica BA175
Genome accession: NC_017571
Putative virulence/resistance : Virulence
Product : type III secretion protein SpaR/YscT/HrcT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2835831 - 2836631 bp
Length : 801 bp
Strand : -
Note : KEGG: svo:SVI_2228 type III secretion system apparatus protein, SpaR/YscT family; TIGRFAM: Type III secretion protein SpaR/YscT; PFAM: Type III secretion system inner membrane R protein

DNA sequence : 
ATGACAACTCTGCTGCCCAATCTGTTAACGGCACAACTTCCTGTATTGGCACTCTGTATGATGCGACCATTAGGCATGAT
GCTGTTATTGCCCCTATTCAAAGGCGGGGCTATGGGTAGCGCATTAATCCGTAATAGCCTGATTTTAATGTTTGCTTTAC
CTACTGTGCTGGCAATGGATGAAATGCAGCCGATACTGCAACAGGCCGACACTTGGATGCTCATCAGCCTATTTGGCAAA
GAAATGATTGTAGGCGTGTTACTTGGTTTTTGCGCCGCTATTCCCTTTTGGGCAATAGATATGGCGGGATTTGTGATTGA
CACCATGCGTGGAGCATCCATGTCGACGGTGCTTAATCCCTTGATGGGACTGCAATCATCGATTTATGGCATGCTGTTTA
CTCAAGTTCTGACAGTGCTGTTTTTAGTCTCGGGTGGTTTTAATTTTCTGTTAACCGCACTCTATCAATCCTATCAACAA
CTTCCCCCAGGATTTAATTTAACGCTAGCCCAACCCTTGATGATGTTTATAGCCCATGAGTGGCAATTGATGTGCCAACT
TTGCCTCAGTTTTGCCATGCCCGCCATGGTGATTATGATCTTAGTCGATGTCGCCTTAGGGCTAGTAAACCGCTCGGCGC
AGCAGTTAAATGTGTTCTTTTTGTCTATGCCCATTAAAAGCGCTTTGGTCTTACTGTTATTAATCTACAGCCTACAGTTT
GCCTTGTCCCATTACCTGCAGACCATTTCTGGGGTAGAGCAGCACGTAGATATTTTGTTTGGACTCTTAGCAGGGCACTA
G

Protein sequence : 
MTTLLPNLLTAQLPVLALCMMRPLGMMLLLPLFKGGAMGSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGK
EMIVGVLLGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQ
LPPGFNLTLAQPLMMFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLSMPIKSALVLLLLIYSLQF
ALSHYLQTISGVEQHVDILFGLLAGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 8e-44 54
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 3e-40 50
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 5e-40 49
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 5e-40 49
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 4e-39 49
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 6e-39 49
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal175_2389 YP_006020946.1 type III secretion protein SpaR/YscT/HrcT VFG0521 Protein 2e-39 49