Gene Information

Name : RIA_0366 (RIA_0366)
Accession : YP_006016888.1
Strain : Riemerella anatipestifer RA-GD
Genome accession: NC_017569
Putative virulence/resistance : Resistance
Product : Beta-lactamase class D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 315918 - 316775 bp
Length : 858 bp
Strand : -
Note : -

DNA sequence : 
TTGTGCGACAGAGGAAATAGAAAAAAACATACTAAAATGAAAAAAACATTTATACTTCTGAATCTAATTTTATTAGTAAA
TCTTAATGGATATTGTCAAACTAAAAGTTTAAAATCAAATGAAATTGTAAAACCTGAATTTAGAAATATATTAGATAGTT
TAAAGGTAAAAGGAGCAATTTTAATTTATGATGTAAAAAACAAAACTTATTATTCAAATGATTTTTCTTGGACAAAAACT
GGAATAATTCCTGCATCGACTTTCAAAATACCAAATTCAAATAGGGCGTTAGAAACAGGAATAATCAAAAATGACTCTAC
AATTTTTAAATGGAATGGTGAAAAACGCAAATTTAAAAATTGGGAAGAAGATTTGACTTTTAAAAAAGCATTTCAAGTTT
CTTGTGTTCCTTGTTATCAAGAAATTGCCAGAAAAATTGGTGTGAAAAGGATGAAAAGATATTTGAAAAAATTAAATTAC
AGAGGAATGGTTTTCGATACTTTGACGATTGATCAATTTTGGTTAGAAGGAGAATCTAAAATTACTCAAATGCAACAAAT
AGATTTTTTAGAACGATTATACTTTTCAAAATTACCGATTTCTAAAAGAACCGAACGTATAATGAAAGACATAATGGAGA
TTGAGAAAACCGAAAGTTATACTTTGAACGGGAAATCAGGCTGGGGAATGAGGAATAAGGGAAACAATGGTTGGTTAGTT
GGATATTTAGAAACGAATAAATCTGTTTATTTTTTCGCAACAAATATAGAAAAACCAGAAACGAATATAGACGAATTTCC
AATTATTCGATTGAATTCAACGAAAGAAGCATTTAGAAAACTGAAATTAATAAAATAA

Protein sequence : 
MCDRGNRKKHTKMKKTFILLNLILLVNLNGYCQTKSLKSNEIVKPEFRNILDSLKVKGAILIYDVKNKTYYSNDFSWTKT
GIIPASTFKIPNSNRALETGIIKNDSTIFKWNGEKRKFKNWEEDLTFKKAFQVSCVPCYQEIARKIGVKRMKRYLKKLNY
RGMVFDTLTIDQFWLEGESKITQMQQIDFLERLYFSKLPISKRTERIMKDIMEIEKTESYTLNGKSGWGMRNKGNNGWLV
GYLETNKSVYFFATNIEKPETNIDEFPIIRLNSTKEAFRKLKLIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 5e-37 42
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 5e-37 42
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 1e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RIA_0366 YP_006016888.1 Beta-lactamase class D JF268688.1.gene5.p01 Protein 3e-97 83
RIA_0366 YP_006016888.1 Beta-lactamase class D AM932669.1.gene2.p01 Protein 3e-37 42
RIA_0366 YP_006016888.1 Beta-lactamase class D U37105.2.gene2.p01 Protein 8e-39 42
RIA_0366 YP_006016888.1 Beta-lactamase class D NC_010410.6002874.p0 Protein 8e-39 42
RIA_0366 YP_006016888.1 Beta-lactamase class D Z22590.1.gene1.p01 Protein 2e-38 41
RIA_0366 YP_006016888.1 Beta-lactamase class D AJ854182.1.gene1.p01 Protein 2e-38 41