|
Name : RIA_1320 (RIA_1320) Accession : YP_006017767.1 Strain : Riemerella anatipestifer RA-GD Genome accession: NC_017569 Putative virulence/resistance : Virulence Product : Urea amidohydrolase (urease) alpha subunit Function : - COG functional category : - COG ID : - EC number : - Position : 1312030 - 1313919 bp Length : 1890 bp Strand : + Note : - DNA sequence : ATGTCAACAGAAGATAAGAATATCAATCTAGAACCAGACCACAACTTAGAATCAGGAGATAACTGGTCAAGAAGAGAGTG GATTAAAGTGGTGGGTGTGGCTACAGCAGGGCTTTCACTTATGGGTATAAGTCCTTTGTTAGCTCAAAATAGTACAGATG TTAAGTTTGAAAACGGAGCCCTTTATGTAAAAAGAGAAACTTATGCATCTCTTTTTGGAGCTACTGTGGGAGATAAAATT CGTCTAGCAGATACAGAGCTATTTATAGAAATAGAAAAAGACTTCCAAACTTATGGTGAAGAAAATAAATTTGGAGGAGG TAAAACTATTCGTGACGGGATGGGTCAGTCATCAACGGTAACGGATAAAGATTGCTTAGATATGTGTATTCTAGGGGCTG TTATTATTGACCACTGGGGAATTGTGAAGGCAGACATCGGAATAAAAGATGGAAAAATAGTGGGTGTAGGTAAGGCAGGT AACCCAGATACTCAAGATGGTGTGTCTCCTAATATGATTATTGGTCCAGCAACAGAGGTACATGGTGGTTGGGGATATAT TGTAACCGCAGGAGGAATAGATACTCATATTCATTACATTTGTCCAGAAATTGCTGATACAGCCTTATATAGTGGAGTTA CAACTCTAATAGGGGGAGGTACAGGACCTAACGATGGTACCAATGCAACTACAGTTACAGGAGGTAAACATTTTATTAAG AGAATGTTGCAGTCTTCAGAAGGGATACCTGTTAATACTGGCTTTTTTGGTAAGGGGAATGTAACTAATATTAAAGCACA AGCCGAAATGATTAAAGCGGGAGCTTGTGGTACCAAAATTCATGAGGATTGGGGTTCAACACCTGCAGCGATAGATGCAG CATTATCTGTTGCGGATAAATATGATGTGCAGGTGGCTATCCACTCAGATACTTTAAATGAAGCAGGTTACTTAGAAGAT ACTGTAAAGGCTATTGATGGAAGAGTAATCCATACTTTCCATACTGAGGGTGCAGGAGGAGGACACGCTCCTGATATTAT GAAGATAGCAATGTATCCTAACATTTTACCATCTTCTACCAACCCTACAAAACCATATACTATCAACACGGCGGCAGAGC ATTTAGATATGCTTATTGTTTGTCATCACTTAGACCCTAATAGTAAAACAGATTTAGCCTTTGCAGATTCAAGAATTCGT CCTTCTACTATTGCAGCGGAAGATATTTTACAAGACTTGGGTGTAATTAGTATGATGAGTTCAGACTCTCAAGCAATGGG TAGAGTTGGAGAGGTAGTTTGTAGAACTTGGCAGACTGCACATAAGATGAAGATTCAAAGAGGTGCTCTTCCAGAAGATA AAAAAGGAAACGATAATTACAGAGTGAAGAGATATGTATCTAAGTATACTATAAATCCAGCTTTAACTCATGGTATATCA GAGTACGTGGGTTCAGTAGAACCTGGAAAAATAGCAGACTTAGTTCTTTGGAAACCAGAAATGTTTGGTGTAAAACCAGA AATTATCTACAAAGCAGGTATGATAGTGGCCTCTAAAATGGGAGATCCTAACGCATCTATACCTACACCACAGCCAATTA TTTACAGAAAAATGTTTGGTGCATTTGGAGATGCTTTAACAGAGACTTCTTTTAACTTTGTATCTAAATATTCTGTAGAT AGTGGGGTAATAGATTCTTATGGGCTTAAGAAAAAATGCTTACCAGTTAAAGGATGTAGAGATGTTAAAAAGAAAGATAT GATTCATAACAACGCTACACCTAATATAGAAATTAATCCAGAAACATACGAAGTGAAAGTAGATGGTAAAGTGCAAACTT GTGAGCCTCTAAAAGAGCTTCCTATGGCACAAAGGTATTTATTGTTCTAA Protein sequence : MSTEDKNINLEPDHNLESGDNWSRREWIKVVGVATAGLSLMGISPLLAQNSTDVKFENGALYVKRETYASLFGATVGDKI RLADTELFIEIEKDFQTYGEENKFGGGKTIRDGMGQSSTVTDKDCLDMCILGAVIIDHWGIVKADIGIKDGKIVGVGKAG NPDTQDGVSPNMIIGPATEVHGGWGYIVTAGGIDTHIHYICPEIADTALYSGVTTLIGGGTGPNDGTNATTVTGGKHFIK RMLQSSEGIPVNTGFFGKGNVTNIKAQAEMIKAGACGTKIHEDWGSTPAAIDAALSVADKYDVQVAIHSDTLNEAGYLED TVKAIDGRVIHTFHTEGAGGGHAPDIMKIAMYPNILPSSTNPTKPYTINTAAEHLDMLIVCHHLDPNSKTDLAFADSRIR PSTIAAEDILQDLGVISMMSSDSQAMGRVGEVVCRTWQTAHKMKIQRGALPEDKKGNDNYRVKRYVSKYTINPALTHGIS EYVGSVEPGKIADLVLWKPEMFGVKPEIIYKAGMIVASKMGDPNASIPTPQPIIYRKMFGAFGDALTETSFNFVSKYSVD SGVIDSYGLKKKCLPVKGCRDVKKKDMIHNNATPNIEINPETYEVKVDGKVQTCEPLKELPMAQRYLLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 3e-154 | 62 |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 3e-154 | 62 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 5e-140 | 59 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 5e-140 | 59 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 5e-140 | 59 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 5e-140 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RIA_1320 | YP_006017767.1 | Urea amidohydrolase (urease) alpha subunit | VFG0270 | Protein | 1e-154 | 62 |
