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Name : clpC (SPSE_2270) Accession : YP_006016340.1 Strain : Staphylococcus pseudintermedius ED99 Genome accession: NC_017568 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : - COG ID : - EC number : - Position : 2329585 - 2332044 bp Length : 2460 bp Strand : - Note : identified by match to protein family HMM PF00004, match to protein family HMM PF02151, match to protein family HMM PF02861, match to protein family HMM PF07724, match to protein family HMM PF07728 DNA sequence : ATGTTATTTGGAAGATTAACAGAACGTGCGCAACGTGTACTCGCGCATGCACAAGAAGAAGCAATTCGTTTAAACCATTC GAATATTGGGACGGAACATTTATTACTCGGGTTAATGAAAGAACCTGAAGGCATTGCTGCAAAAGTATTAGAAAGCTTTG ACATTACAGAAGATAAAGTGATCGAAGAGGTTGAAAAACTCATTGGCCATGGTCAAGAGCAAATGGGTGCTTTACACTAT ACACCACGTGCCAAAAAAGTAATCGAACTTTCTATGGACGAAGCACGTAAGTTACAACACAACTTCGTCGGTACTGAACA CATCTTGTTAGGTTTAATCCGCGAAAATGAAGGTGTTGCCGCACGTGTATTTGCAAACCTAGACCTCAATATTACAAAAG CACGTGCACAAGTGGTGAAAGCGTTAGGTAGCCCAGAAATGTCTAATAAAAATGCACAATCTGCAAAATCAAATAACACA CCGACATTAGATGGCCTAGCGCGTGATTTAACAGTGATTGCTAGAGATGGTACTTTAGATCCAGTTGTAGGTCGTAATTC AGAAATTACACGTGTGATTGAAGTGTTGAGTCGTCGCACAAAAAATAATCCTGTGTTGATTGGTGAACCTGGTGTTGGTA AAACAGCGATTGCTGAAGGTTTGGCGCAAGCAATTGTCAACAACGAAGTACCAGAAACGTTGAAAGGTAAACGTGTCATG TCATTAGATATGGGGACTGTTGTGGCTGGTACAAAATATCGTGGTGAATTTGAAGAACGTTTGAAAAAAGTTATGGAAGA AATTCATCATGCGGGCAATGTGATTCTGTTCATTGACGAAATGCATACGCTCATTGGTGCAGGTGGTGCAGAAGGTGCGA TTGATGCGTCTAATATTTTAAAACCAGCGCTTGCACGTGGTGAATTACAATGTATCGGTGCGACAACTTTAGATGAATAC CGTAAGCATATTGAAAAAGATGCTGCACTTGAGCGTCGTTTCCAACCTGTTCAAGTCAATGAACCAAGCGTGGCAGATAC AATTGCAATCTTAAAAGGTTTACGAGATCGTTACGAAGCGCACCATAGAATTAATATTTCAGATGAAGCGGTGGAAGCGG CAGCAAAATTAAGTGATCGATACGTACAAGACCGTTTCTTACCAGATAAAGCGATTGACTTGATTGATGAAGCTAGTTCA AAAGTGCGCTTGAAAAGCCATACAACACCAACGAACTTAAAAGAAATTGAACAACAAATCGAGCAAGTGAAAAAAGAAAA AGATGCAGCAGTGCATGCACAAGAATTCGAAAATGCTGCAAACTTACGTGACAAACAAACAAAACTTGAAAAACAATATG AAGAAGCAAAAAACGAATGGCAAAATCATCAAGGGGGCCAACATACAACACTAGTTGCTGAAGATATTGCTGAAGTGATC GCAGGTTGGACAGGTATCCCATTAACACGCTTGAATGAAACGGAGTCAGAACGTTTACTGAATTTAGAAGACACATTGCA TGAGCGAGTAATCGGACAAAATGATGCGGTAATCGCTATTTCTAAAGCAGTACGCCGTGCGCGTGCAGGCTTGAAAGATC CGAAACGTCCAATCGGAAGCTTCATCTTCTTAGGGCCAACAGGTGTCGGTAAAACCGAACTTGCACGTGCATTAGCTGAA GCGATGTTTGGTGAAGAAGATGCGATGATTCGTGTTGATATGAGTGAGTTCATGGAGAAACATGCGGTGAGTCGTCTTGT TGGGGCGCCTCCTGGATATGTTGGTCACGATGATGGCGGTCAATTGACTGAAAAAGTACGTCGCAAACCTTATTCTGTTA TCTTGTTTGATGAGATTGAAAAAGCACACCCAGATGTCTTTAACATTCTTTTACAAGTATTAGATGATGGGCATTTGACT GATACAAAAGGCCGTCGTGTGGATTTTAGAAATACAGTGATTATTATGACATCCAATGTCGGCGCGCAAGAACTTCAAGA CCAACGTTTTGCAGGTTTCGGTGGTAGTTCAGAAGGTCAAGACTATGAAACAATTCGCAAAACGATGATGAAAGAACTGA AAAGTGCATTCCGTCCTGAGTTCTTGAACCGTGTGGATGACACGATTGTTTTCCATAAATTAAATAAAGACGAATTGAAA GAAATCGTTACAATGATGGTCGGCAAATTGACGAGTCGTCTTTCTGAACAAAACATTAATGTACGTGTGACAGAAGCGGC GAAAGACAAGATTGCTGAAGAAGGCTACGACCCAGAGTATGGTGCACGTCCATTGATTCGTGCGATCCAAAAAACGGTTG AAGATAACTTGAGTGAATTGATTTTAGAAGGTAAAGAGTTAGAAGGTAAAAATGTGACTGTAGACTATGATGGAGAAACA TTCCAATATGATATTCATGAACGTGAAACGAATGAAGATAAGGAAGTCACAGAATCATAA Protein sequence : MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFDITEDKVIEEVEKLIGHGQEQMGALHY TPRAKKVIELSMDEARKLQHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQSAKSNNT PTLDGLARDLTVIARDGTLDPVVGRNSEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVM SLDMGTVVAGTKYRGEFEERLKKVMEEIHHAGNVILFIDEMHTLIGAGGAEGAIDASNILKPALARGELQCIGATTLDEY RKHIEKDAALERRFQPVQVNEPSVADTIAILKGLRDRYEAHHRINISDEAVEAAAKLSDRYVQDRFLPDKAIDLIDEASS KVRLKSHTTPTNLKEIEQQIEQVKKEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWQNHQGGQHTTLVAEDIAEVI AGWTGIPLTRLNETESERLLNLEDTLHERVIGQNDAVIAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE AMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLT DTKGRRVDFRNTVIIMTSNVGAQELQDQRFAGFGGSSEGQDYETIRKTMMKELKSAFRPEFLNRVDDTIVFHKLNKDELK EIVTMMVGKLTSRLSEQNINVRVTEAAKDKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILEGKELEGKNVTVDYDGET FQYDIHERETNEDKEVTES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_006016340.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 72 |
| clpC | YP_006016340.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 2e-153 | 53 |
