Gene Information

Name : Sput200_3283 (Sput200_3283)
Accession : YP_006011142.1
Strain : Shewanella putrefaciens 200
Genome accession: NC_017566
Putative virulence/resistance : Unknown
Product : ISSpu24ISSpu24 transposase, TnpA_ISSpu24
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3727755 - 3729308 bp
Length : 1554 bp
Strand : -
Note : KEGG: pfs:pQBR0428 transposase TnpC protein

DNA sequence :
ATGAAAACAGGCCGTCAAGCACTTCCAACCGATACTCATGCATTGCAACAAATGGTGTTGCAGATGCAATCTGAGCTGTC
TGAAAATAATAAGAAACTGTCCGCTCAAGACTCCGTTATCGATAACCTACGCCATCAATTAGCGGTATTAAAGCGTGCGC
GTTTTGGTCGATCATCAGAGCAAGTTGAGCAAAATATCCATCAGTTGGAATTACAGCTTGAAGAGCTAGAAATCGCCCAA
GCACAGACGGCCCCTGGTAGCCGTGCTGCAGGCACGGTCAAGAAGACATCTCGTCGTCGCATCACATTACCTGAACACTT
AGCACGAGAAGAATACCGCTTAGATACGCATGAGTCCTGCCCAGACTGCCAAGGTGCGTTGTGCCATATCGGTGATGATG
TCTCAGAAATCTTGGATGTGGTGCCAGCATCGTATCGTGTGATTAAAACCGTGCGACCTAAATACAGCTGTAAGGCCTGT
GACACCGTGGTTCAAGCGCCTGCACCGCAACGAGTGATTAATAAAGGCCTGCCAAGTGCTGGGTTGTTGACACAAGTGAT
GGTCGATAAATACATGGACCATCAGCCGTTGTACCGTCAATCACAACAGATGGCGCGAGAAGGGATTGATGTTGAGCGCT
CAACGTTAGCGGATTGGGTGGGGCAAGTGAGTCGCTTACTCACTCCGCTAGCGCAAGCAATAGAGCGTCATGTCACACAG
GCTTCTCACTTACATGCCGATGACACCACAGCACCGACACTATCACCAGGTAAAGGACGTACACAAACGGGACGATATTG
GACGTATGTTAGGGATGGTCGAGCATGGAATGAAGCTGCGCCGCCTGCGGTCTGGTTACAATACAGTGAAGATAGAAAAA
GTATCCATCCCACCATGCATTTACGCCACTTTACTGGGGCACTGCAAGCGGATGCGTATGCTGGTTATAATGATGTGTAT
CGTAACAAGGTGACTTTTGTCGCTTGTTTAGCGCATGTCAGGCGAAAGTTTTATGATATTACCCAATCGGGCCCAGCGCC
TACTGCACAGCAGGCTATCGAATATATCCAACAGCTGTATGCGATTGAAAAAACTATCCGCAATCAACCACCGGATAAGC
GCTTAGCAATACGACAACAACAATCTGTGCCGATACTGACTGAGTTTTATGATTACTTAGCCACAAGCTTGCGCACCTTA
TCAAAAGGCTCGGCGATGTCTAAAGCCGTGGCGTATGCGATAAATCAACAAGATGGGATTATGGCCTATACCCAAGATGG
TCGTGCGGCTATTGATAACAACTCGGCGGAGCGGTCTATCCGTCCCATTGCACTGGGTAGAAAAAATTACTTGTTCGCAG
GCTCTAAAGCCGGCGGTGAACGAGCTGCAGTACTGTATACCATTCTCGGTACAGCGAGATTAAATGATATTAATCCGAAT
CAATATCTCACAGCAGTCTTAAAGCGCATAGGACAACACCAAATCAATAAAGTCGATGAACTCTTACCATGGAACATTGA
CCTAAGCACACCCACCCAAAACGAAGCTATCTAA

Protein sequence :
MKTGRQALPTDTHALQQMVLQMQSELSENNKKLSAQDSVIDNLRHQLAVLKRARFGRSSEQVEQNIHQLELQLEELEIAQ
AQTAPGSRAAGTVKKTSRRRITLPEHLAREEYRLDTHESCPDCQGALCHIGDDVSEILDVVPASYRVIKTVRPKYSCKAC
DTVVQAPAPQRVINKGLPSAGLLTQVMVDKYMDHQPLYRQSQQMAREGIDVERSTLADWVGQVSRLLTPLAQAIERHVTQ
ASHLHADDTTAPTLSPGKGRTQTGRYWTYVRDGRAWNEAAPPAVWLQYSEDRKSIHPTMHLRHFTGALQADAYAGYNDVY
RNKVTFVACLAHVRRKFYDITQSGPAPTAQQAIEYIQQLYAIEKTIRNQPPDKRLAIRQQQSVPILTEFYDYLATSLRTL
SKGSAMSKAVAYAINQQDGIMAYTQDGRAAIDNNSAERSIRPIALGRKNYLFAGSKAGGERAAVLYTILGTARLNDINPN
QYLTAVLKRIGQHQINKVDELLPWNIDLSTPTQNEAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-90 48
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 7e-102 48
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 4e-95 46
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 8e-107 44
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 1e-106 44
tnp AEA34686.1 transposase Not tested Not named Protein 2e-107 44
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 9e-106 44
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 2e-106 44
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 9e-106 44
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 3e-106 44
unnamed AAC31494.1 L0015 Not tested LEE Protein 9e-107 44
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 1e-106 44
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 1e-106 44
unnamed AAL57570.1 unknown Not tested LEE Protein 9e-107 44
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 3e-106 43
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 1e-96 43
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 1e-96 43
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 4e-70 41
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 2e-90 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sput200_3283 YP_006011142.1 ISSpu24ISSpu24 transposase, TnpA_ISSpu24 VFG1700 Protein 1e-90 48
Sput200_3283 YP_006011142.1 ISSpu24ISSpu24 transposase, TnpA_ISSpu24 VFG0793 Protein 5e-107 44
Sput200_3283 YP_006011142.1 ISSpu24ISSpu24 transposase, TnpA_ISSpu24 VFG1513 Protein 2e-70 41
Sput200_3283 YP_006011142.1 ISSpu24ISSpu24 transposase, TnpA_ISSpu24 VFG1736 Protein 5e-75 41