Gene Information

Name : Sput200_3270 (Sput200_3270)
Accession : YP_006011131.1
Strain : Shewanella putrefaciens 200
Genome accession: NC_017566
Putative virulence/resistance : Resistance
Product : Beta-lactamase
Function : -
COG functional category : -
COG ID : -
EC number : 3.5.2.6
Position : 3715060 - 3715872 bp
Length : 813 bp
Strand : -
Note : KEGG: shw:Sputw3181_0786 beta-lactamase; PFAM: penicillin-binding protein transpeptidase

DNA sequence :
ATGCGTTTGTTCGTCATCTCGGCGGTATTGGTGATGTCCTCCATCTCAGCTTCCCCTGTTTTTGCTGCTAGCTCGCCCCA
AAAAGAGTGGCAAGAAACCCGCAGTTGGGATGCCAGTTTTACTCAGCACCAAGCTAAAGGCGTGGTGGTGTTATGGAATG
AAAATAAACAACAGGGATTCACTAATAATATTAAACGCGCCAATCAAGGTTTTTTACCTGCATCGACGTTTAAAATTCCC
AACAGTTTGATTGCTCTCGATTTAGGGATGGTGAAAGATGAGCACCAAGTTTTTAAGTGGGATGGTAAAAATCGTGATAT
TGCCGCCTGGAATCGTGACCATAATTTGATTAGCGCCATGAAGTATTCGGTTGTGCCCATCTACCAAGAGTTTGCTCGCC
AAATAGGTGATGCTCGCATGGGGAAGATGATCGCTGTTTTTGATTATGGCAATGAGGATATCTCAGGCAATTTAGACAGT
TTTTGGTTAGATGGAGGCATTCGGATCTCAGCCAAAGAGCAAATCGATTTCCTACGTCGGCTTTATCATAACAAGTTGCA
TGTTTCCGAGAGAAGTCAGCGTATTGTTAAGCAAGCCATGCTGACTGAAGCCAATAGTGACTATATTATCCGCGCAAAAA
CGGGTTATGCCGTAAGGGCCGAACCGAGCATTGGTTGGTGGGTCGGTTGGGTAGAACTCGATGATAATGTATGGTTTTTT
GCAATGAATATGGATATGCCATCAGCGGATGGTTTGGCACTGCGCCAAGCCATTACAAAAGAAGTACTCAGGCAGGAAAA
GATTATCCCCTAA

Protein sequence :
MRLFVISAVLVMSSISASPVFAASSPQKEWQETRSWDASFTQHQAKGVVVLWNENKQQGFTNNIKRANQGFLPASTFKIP
NSLIALDLGMVKDEHQVFKWDGKNRDIAAWNRDHNLISAMKYSVVPIYQEFARQIGDARMGKMIAVFDYGNEDISGNLDS
FWLDGGIRISAKEQIDFLRRLYHNKLHVSERSQRIVKQAMLTEANSDYIIRAKTGYAVRAEPSIGWWVGWVELDDNVWFF
AMNMDMPSADGLALRQAITKEVLRQEKIIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 2e-58 47
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 1e-55 45
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 1e-55 45
blaOXA-2 YP_005176242.1 beta-lactamase OXA-2 protein Not tested ICEPmu1 Protein 1e-39 44
ACICU_00226 YP_001844885.1 Beta-lactamase class D Not tested AbaR20 Protein 2e-40 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sput200_3270 YP_006011131.1 Beta-lactamase AY500137.1.gene1.p01 Protein 5e-106 82
Sput200_3270 YP_006011131.1 Beta-lactamase JN205800.1.gene6.p01 Protein 2e-105 81
Sput200_3270 YP_006011131.1 Beta-lactamase HM015773.1.gene6.p01 Protein 1e-105 81
Sput200_3270 YP_006011131.1 Beta-lactamase HQ700343.1.gene1.p01 Protein 2e-102 80
Sput200_3270 YP_006011131.1 Beta-lactamase AY343493.1.gene1.p01 Protein 7e-74 60
Sput200_3270 YP_006011131.1 Beta-lactamase NC_010410.6002874.p0 Protein 1e-58 47
Sput200_3270 YP_006011131.1 Beta-lactamase U37105.2.gene2.p01 Protein 1e-58 47
Sput200_3270 YP_006011131.1 Beta-lactamase Z22590.1.gene1.p01 Protein 5e-58 46
Sput200_3270 YP_006011131.1 Beta-lactamase AJ854182.1.gene1.p01 Protein 3e-58 46
Sput200_3270 YP_006011131.1 Beta-lactamase X75562.1.gene1.p01 Protein 2e-55 46
Sput200_3270 YP_006011131.1 Beta-lactamase AY445080.1.gene1.p01 Protein 1e-57 46
Sput200_3270 YP_006011131.1 Beta-lactamase AM412777.1.gene1.p01 Protein 1e-57 46
Sput200_3270 YP_006011131.1 Beta-lactamase AM932669.1.gene2.p01 Protein 8e-56 45
Sput200_3270 YP_006011131.1 Beta-lactamase AF300985.1.gene1.p01 Protein 4e-38 44
Sput200_3270 YP_006011131.1 Beta-lactamase X58272.1.gene1.p01 Protein 8e-56 44
Sput200_3270 YP_006011131.1 Beta-lactamase AF350424.1.gene1.p01 Protein 8e-37 44
Sput200_3270 YP_006011131.1 Beta-lactamase AF317511.1.gene5.p01 Protein 5e-39 44
Sput200_3270 YP_006011131.1 Beta-lactamase AF315351.1.gene2.p01 Protein 3e-40 44
Sput200_3270 YP_006011131.1 Beta-lactamase M95287.gene.p01 Protein 5e-40 44
Sput200_3270 YP_006011131.1 Beta-lactamase JF795487.1.gene1.p01 Protein 4e-39 44
Sput200_3270 YP_006011131.1 Beta-lactamase U59183.1.gene3.p01 Protein 2e-58 43
Sput200_3270 YP_006011131.1 Beta-lactamase AF231133.1.gene3.p01 Protein 5e-57 43
Sput200_3270 YP_006011131.1 Beta-lactamase AF371964.1.gene1.p1 Protein 3e-38 43
Sput200_3270 YP_006011131.1 Beta-lactamase AY139598.1.gene3.p01 Protein 7e-39 43
Sput200_3270 YP_006011131.1 Beta-lactamase JF800667.1.gene2.p01 Protein 2e-38 43
Sput200_3270 YP_006011131.1 Beta-lactamase AY289608.1.gene2.p01 Protein 2e-39 43
Sput200_3270 YP_006011131.1 Beta-lactamase U63835.1.gene1.p01 Protein 1e-39 43
Sput200_3270 YP_006011131.1 Beta-lactamase EF552405.1.gene1.p01 Protein 1e-39 43
Sput200_3270 YP_006011131.1 Beta-lactamase GQ202693.1.gene2.p01 Protein 5e-40 43
Sput200_3270 YP_006011131.1 Beta-lactamase Y10693.2.gene1.p2 Protein 2e-40 42
Sput200_3270 YP_006011131.1 Beta-lactamase DQ522237.1.gene5.p01 Protein 2e-40 42
Sput200_3270 YP_006011131.1 Beta-lactamase L07945.1.gene1.p01 Protein 1e-40 42
Sput200_3270 YP_006011131.1 Beta-lactamase EU086834.1.gene1.p01 Protein 4e-35 42
Sput200_3270 YP_006011131.1 Beta-lactamase AF024602.1.gene3.p01 Protein 9e-41 42
Sput200_3270 YP_006011131.1 Beta-lactamase AY619003.1.gene1.p01 Protein 5e-33 41
Sput200_3270 YP_006011131.1 Beta-lactamase EU086830.1.gene1.p01 Protein 7e-35 41
Sput200_3270 YP_006011131.1 Beta-lactamase JF273470.1.gene1.p01 Protein 1e-35 41