Gene Information

Name : Sput200_2533 (Sput200_2533)
Accession : YP_006010443.1
Strain : Shewanella putrefaciens 200
Genome accession: NC_017566
Putative virulence/resistance : Virulence
Product : two component Sigma54 specific transcriptional regulator of C4-dicarboxylate transport, DctD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2917442 - 2918821 bp
Length : 1380 bp
Strand : +
Note : KEGG: shw:Sputw3181_1504 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA AT

DNA sequence : 
ATGAATGCGCCCAATTCAATCCAAGACTATTCAGTACTTATCATCGATGATGAGCCACATATAGGCACCGTCTTAGTGCA
ATTGTTCGAACTAGAAGGTATTAAAGCCATCACTCGCACTGAACCTAAAGATATTGCCAAACTGCTTGATAAAGATTGGG
CCGGAGTCGTGATCTCCGATGTGAATATGCCACAGCTTGATGGCATTAGTCTTATGCAACAAATTCGCCAGCAAGATCCT
GATTTACCCGTAGTCCTACTCACAGGTTTTGGCGATATCGCTATGGCAGTCAATGCCTTAAAGCAAGGCGCTTACGATTT
TCTCGAAAAACCCTTTAATAATGAACATATGCTCGATGTGGTTAAACGCGCCTTAGATAAACGCAGTTTGACCCTAGAAA
ACCGTAAACTAAAAAAAGAACTAGAGAGCCAAAGCGTTCCCGGGCCACGTATTTTGGGGCACAGTGTTGGCATTAACCGT
ATGCGCCATATTATTGAACAAGTCATCAATACGCCTGCTGACGTATTGATTGAAGGAGAAACAGGCACAGGTAAAGAACT
CGTTGCCCGTTATCTGCACGATCACAGCAACCGTAACCAAGCCAACTTTGTGGCCATTAACTGCGGCGCGATCCCTGAAA
ATCTTATCGAAAGTGAACTCTTTGGCGCCGAAGCTGGTGCCTTTACGGGGGTCGATAAAATGCGGGTGGGTAAGTTTGAA
TACGCTAATGGTGGCACACTGTTTTTGGATGAAATTGAAAGTACACCACTCTCGCTCCAAGTGAAACTACTCAGAGTGTT
AGAAGATCGTAAAGTTGAACGCTTAGGTTCCAATAAAAGCATCAATTTAGATATACGTGTGATTGCCGCCACCAAAGTTG
ATTTAAAAAGCCTGTGTGATACAGGGGAGTTTCGTCAAGATTTACTCTACCGCTTGAATCTAGTGACGGTTCCCATTCCG
CCACTAAGGGATCGACGTGAAGATATTCCCCTACTCTTTTTACATTTTGCGCGAGTCGCATCGGCTCGATATCACAAAGC
ACTTATCGCGTTAAATGCTGAGCAAAATGCCATACTCACCTCACACGACTGGCCGGGCAATGTACGTGAATTACGTAATC
TGGCTGAACGCTATGTACTACTCGGTGGAGAAGCCGCTTTTGCCGGTTCACTTGGCAATACACCAAGTCTGCACTCCAGC
ATGTCTTTACTGCAACGGGTCGAGTTTTTCGAGCGTGTACTGATTGAGGAAGCCTTAAGCCACAACAAAGGCAGTATCAA
ACTGACGATGGAACAGCTTGAACTCCCTCGCAAAACCTTATATGACAAGATGCGCAAATATGATTTAGACCGCAAGCAGT
ATGTAAATTCAGAGGACTAG

Protein sequence : 
MNAPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKAITRTEPKDIAKLLDKDWAGVVISDVNMPQLDGISLMQQIRQQDP
DLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSLTLENRKLKKELESQSVPGPRILGHSVGINR
MRHIIEQVINTPADVLIEGETGTGKELVARYLHDHSNRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKMRVGKFE
YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSINLDIRVIAATKVDLKSLCDTGEFRQDLLYRLNLVTVPIP
PLRDRREDIPLLFLHFARVASARYHKALIALNAEQNAILTSHDWPGNVRELRNLAERYVLLGGEAAFAGSLGNTPSLHSS
MSLLQRVEFFERVLIEEALSHNKGSIKLTMEQLELPRKTLYDKMRKYDLDRKQYVNSED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS NP_791207.1 type III transcriptional regulator HrpS Virulence Hrp PAI Protein 5e-52 41
hrpS AAC34753.1 HrpS Virulence Hrp PAI Protein 5e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sput200_2533 YP_006010443.1 two component Sigma54 specific transcriptional regulator of C4-dicarboxylate transport, DctD BAC0089 Protein 5e-70 42
Sput200_2533 YP_006010443.1 two component Sigma54 specific transcriptional regulator of C4-dicarboxylate transport, DctD BAC0467 Protein 9e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sput200_2533 YP_006010443.1 two component Sigma54 specific transcriptional regulator of C4-dicarboxylate transport, DctD VFG1249 Protein 1e-63 42