Gene Information

Name : Y11_p0621 (Y11_p0621)
Accession : YP_006007910.1
Strain :
Genome accession: NC_017565
Putative virulence/resistance : Virulence
Product : type III secretion cytoplasmic protein (YscF)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 41110 - 41373 bp
Length : 264 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTAATTTCCCTGGGTTTGCAAAAGGAACCGATATCACAGACTTAGATGCGGTGGCTCAAACGCTCAAGAAGCCAGC
AGACGACGCAAACAAAGCGGTTAATGACTCGATAGCAGCGTTGAAAGATACGCCTGACAACCCGGCGCTACTTGCTGACT
TACAACATTCAATTAATAAATGGTCGGTAATTTACAATATGAGCTCAACCATAGTTCGTAGCATGAAAGACTTAATGCAA
GGCATCCTACAGAAGTTCCCATAA

Protein sequence : 
MSNFPGFAKGTDITDLDAVAQTLKKPADDANKAVNDSIAALKDTPDNPALLADLQHSINKWSVIYNMSSTIVRSMKDLMQ
GILQKFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 3e-23 72

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Y11_p0621 YP_006007910.1 type III secretion cytoplasmic protein (YscF) VFG0405 Protein 1e-33 94
Y11_p0621 YP_006007910.1 type III secretion cytoplasmic protein (YscF) VFG0214 Protein 6e-19 66