Gene Information

Name : Y11_p0571 (Y11_p0571)
Accession : YP_006007905.1
Strain :
Genome accession: NC_017565
Putative virulence/resistance : Virulence
Product : type III secretion cytoplasmic protein (YscK)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 38549 - 39175 bp
Length : 627 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAAATTATATTACCTCTTTTCAATTGCGCTTCTGCCCCGCGGCTTATTTGCACTTGGAACAGTTACCATCATTATG
GCGTTCAATATTGCCCTACTTACCTCAGTGGCGCGATAGTGCTCATCTCAATGCTGCTTTATTGGATGAATTTTCTCTTG
ATACCGACTATGAAGAGCCCCATGGGTTGGGGGCGCTGCCTTTGCAGCCCCAATCACAGCTCGAACTGTTACTTTGTCGC
CTTGGATTAGTTCTGCATGGGGAGGCGATTCGCCGTTGTGTACTGGCCTCCCCATTACAACAATTATTGACATTGGTTAA
TCAAGAAACATTAAGGCAAATTATTGTACAGCATGAGCTGCTAATCGGGCCTTGGCCCACTAACTGGCAGCGCCCGCTGC
CGACAGAAATAGAGAGCCGTACCATGATCCAGTCGGGGCTGGCTTTTTGGTTAGCAGCAATGGAACCCCAACCTCAGGCA
TGGTGTAAACGGCTCAGTTTACGCCTCCCATTAGCTACGCCGTCAGAACCTTGGTTAGTGGCCGAGTCACAACGCCCACT
GGCCCAAACTTTATGTCACAAACTTGTCAAACAGGTGATGCCTACATGCAGCCATTTGTTCAAATAA

Protein sequence : 
MENYITSFQLRFCPAAYLHLEQLPSLWRSILPYLPQWRDSAHLNAALLDEFSLDTDYEEPHGLGALPLQPQSQLELLLCR
LGLVLHGEAIRRCVLASPLQQLLTLVNQETLRQIIVQHELLIGPWPTNWQRPLPTEIESRTMIQSGLAFWLAAMEPQPQA
WCKRLSLRLPLATPSEPWLVAESQRPLAQTLCHKLVKQVMPTCSHLFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscK AAO18026.1 LscK Virulence TTSS locus Protein 7e-40 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Y11_p0571 YP_006007905.1 type III secretion cytoplasmic protein (YscK) VFG0410 Protein 2e-81 99
Y11_p0571 YP_006007905.1 type III secretion cytoplasmic protein (YscK) VFG0219 Protein 2e-23 41