Gene Information

Name : Y11_35451 (Y11_35451)
Accession : YP_006007044.1
Strain : Yersinia enterocolitica Y11
Genome accession: NC_017564
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3677894 - 3678544 bp
Length : 651 bp
Strand : +
Note : -

DNA sequence : 
ATGGAGTTACTGAATTCGTCCTCTCAATTGATTGTCCTGCTTTTTCTTCTGTCATTACTCCCCTTGCTGATGGTGATGGG
AACATCGTTTCTCAAACTATCGATTGTTTTATCATTGCTGCGAAATGCATTAGGGGTGCAGCAAGTGCCGCCCAATATTG
CCATTTACGGTTTGGCGCTGGTGTTAACCATTTTTATCATGGCTCCGGTCGGATTGGATGTACATGCCCGCCTACAGGAT
GAGCCGTTACCCAATGATCTCGGTGCTTTGCTATATCATATTGACGAGCATGCGCTGGAGCCATATCGCGATTTTTTACA
ACGAAATACCGATGCAGCACAGGTTCATTTTTTCAATGACATCGTCCAAACCAAGTGGCCGGTACGCTATCGCGACACTA
TCAAACCCAACTCGCTGCTGATATTAATGCCCGCTTTTACCCTGAGCCAACTAACTGAAGCCTTTAAAATTGGCTTACTG
CTTTACTTGCCCTTTGTGGCGATTGATTTGATTGTCTCTAATATTTTGCTGGCAATGGGCATGATGATGGTATCTCCCAT
TACGATTTCATTACCATTCAAGTTATTAATTTTCATACTTATTGATGGCTGGGGATTGTTGCTGGGGCAGTTAGTGGGAT
CTTACTTATGA

Protein sequence : 
MELLNSSSQLIVLLFLLSLLPLLMVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQD
EPLPNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILMPAFTLSQLTEAFKIGLL
LYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDGWGLLLGQLVGSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-76 84
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-54 60
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-54 60
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-55 60
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-55 60
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-55 60
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-52 59
escR AAC31528.1 L0049 Virulence LEE Protein 4e-48 57
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-48 57
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-48 57
escR AAK26700.1 EscR Virulence LEE Protein 4e-48 57
escR AAL57527.1 EscR Virulence LEE Protein 4e-48 57
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-48 57
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-48 57
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-48 57
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-48 57
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-48 57
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-47 57
escR AAC38369.1 EscR Virulence LEE Protein 3e-47 56
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-45 55
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-45 55
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-47 55
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-38 49
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-38 49
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-38 49
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-40 49
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-40 49
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-35 48
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-39 48
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-39 48
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-37 48
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-35 48
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-33 48
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-33 48
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-34 48
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-34 48
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-39 48
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-39 48
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-39 48
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-39 48
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-38 47
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-30 45
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-30 45
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 7e-31 45
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 7e-31 45
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG0519 Protein 2e-55 60
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG0827 Protein 2e-48 57
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG0394 Protein 2e-48 56
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG0715 Protein 2e-47 56
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG0188 Protein 4e-51 55
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG0044 Protein 2e-43 51
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG0551 Protein 2e-31 45
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG2338 Protein 3e-30 43
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG2455 Protein 4e-35 42
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG1773 Protein 6e-35 42
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG1012 Protein 1e-35 41
Y11_35451 YP_006007044.1 type III secretion inner membrane protein VFG1259 Protein 4e-30 41