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Name : Y11_35391 (Y11_35391) Accession : YP_006007038.1 Strain : Yersinia enterocolitica Y11 Genome accession: NC_017564 Putative virulence/resistance : Virulence Product : type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) Function : - COG functional category : - COG ID : - EC number : - Position : 3672706 - 3674745 bp Length : 2040 bp Strand : + Note : - DNA sequence : ATGAGAGAATCGGCATTGACGCGCGGCTTGATGATGATAGCTGCGCGGCAGGATGTTTTTTTGGCAGTCATGCTGCTGGT AGCGATCTTTATGATGATTCTGCCGCTGCCCACCGTCATGGTGGATGTGCTGATTGCCGTCAACCTCTCATTTTCCGTTA TTCTGTTGATGATCTCGATTTATCTGCGTGACCCACTTGAATTCTCGGTTTTCCCATCGTTGTTACTGATAACCACACTT TATCGATTAGCGCTAACTATCAGTACCACGCGCTTGGTACTGCTACAGCATGATGCGGGAGAAATTGTCGAGGCGTTTGG CCAGTTTGTGGTAGGGGGTAATCTAGCGGTGGGGCTGATCATTTTCACCATTATCACCGTGGTGCAGTTTATCGTGATCA CTAAAGGCTCGGAGCGCGTCGCTGAAGTTAGTGCCCGCTTTTCTCTTGATGGCATGCCGGGCAAGCAAATGAGTATTGAC GGCGATATGCGAGCAGGGGTGATCGACTCGGCTGAAGCGGGGCGACTACGCGAGCGGGTCCAAAAAGAGAGCCGTATGTT TGGTGCTATGGATGGGGCGATGAAGTTCGTTAAAGGGGATGCTATCGCCGGCATTATTGTCATTCTGGTGAATATTATCG GCGGCATCACTATTGGTGTGTTGCAACATAATATGTCTGCCGAAGAGGCGATGACCACGTATGCCGTGTTATCCGTCGGG GATGGATTATGCGCTCAAATCCCGTCATTACTTATCTCGATCACGGCTGGGATAATTGTCACCCGGGTGCCTGACCAGGA TAAACAGAGTTTGGCTAAAGACTTGGCAATACAAGTAGGGCGTCAACCCGATGCCTTGTTGCTGGCAGCGGCGATCTTGA CTGTTTTTGCCCTGTTGCCAGGTTTTCCTTTCCTGATTTTTATCCTGCTGGCAGCACTGGTCGCTACCCCCGCCTTCTTA CTTTATCGGAAGAAGAAACCCAGCGCTGGAGCCAGTGGTCGTGGCGATAAACTGCCTTCTCCAGCCAGCGCGATGACCCC TGGGGCCGTGCCATTGATGCTGTATTGCGCGCCAAATTTACACTATCCCCATTTGGGGCGAGATCTTGATGGCTTGCGTT GGCGCTGGTTCGAACATCTTGGCGTGCCATTGCCCGAGGTGGTTGTCCGCAGTGATCCCAGCCTGGCTGAAAATGAATTA TCGATCCGAGTCTATCAAGAGCAAGTGCTGAAACTGACATTACCCTTTGATGATGTATTACTGCTGCAACCCAGTACCTC GCTCGCCACACGCAGTCAGGTTCTTGGCATGAAAATGGGTAGCTTTGAGTGGTTGCCCGCCGAGCAGGCGCATCATGCCA GCACGTTAGGCATTCCCTATGCGCAGGGGCATCAATGCATTATTCATTGCCTGACACGCGTGCTTGAGCGGCATACCGCT GAGTTTATTGGTGTACAAGAAACCCGTTATCTGATGGACGCTATGGAGGCGCGTTACGGCGAGCTGGTCAAAGAGCTCCA GCGCCAGATGCCGGTCGGCAAGGTGGCAGAAACACTGCAAAGATTGGTGGAAGAAGATATTTCGATCCGCGATTTACGCA CTATTTTCGGGGCGCTGGTGGCGTGGGCACCGAAAGAGAAAGATATCGTCATGTTGACCGAATATGTCCGTATCGCCCTA CGTCGCCATGTGTGTAGCCGATTTAGCAAAAACAAAGTCTGGTTACCAGTATTGCGGCTGGGGGAAGGGGCGGAGACTTT GATCCATGAGTCTATCCGTCAGACCTCAGCGGGGACCTATTCTGCGCTGGAAAATAAACATTCGCGGCTGCTTCTCGACA AAATAACAGGCGCTTTTGCTGAAAATACCGATGCTGTGTTGTTGACGAGCATAGATGTACGGCGCTTTTTACGCAAAATT GTTGAGCGGGATATTTTTGCGCTACCGGTACTGTCCTGGCAGGAACTGGGCGATGAAATGAATATTAAGGTCGTAGGTAC CATCGAGCTTATCGGAGATGAACTTGATGAAACTACCTGA Protein sequence : MRESALTRGLMMIAARQDVFLAVMLLVAIFMMILPLPTVMVDVLIAVNLSFSVILLMISIYLRDPLEFSVFPSLLLITTL YRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGLIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSID GDMRAGVIDSAEAGRLRERVQKESRMFGAMDGAMKFVKGDAIAGIIVILVNIIGGITIGVLQHNMSAEEAMTTYAVLSVG DGLCAQIPSLLISITAGIIVTRVPDQDKQSLAKDLAIQVGRQPDALLLAAAILTVFALLPGFPFLIFILLAALVATPAFL LYRKKKPSAGASGRGDKLPSPASAMTPGAVPLMLYCAPNLHYPHLGRDLDGLRWRWFEHLGVPLPEVVVRSDPSLAENEL SIRVYQEQVLKLTLPFDDVLLLQPSTSLATRSQVLGMKMGSFEWLPAEQAHHASTLGIPYAQGHQCIIHCLTRVLERHTA EFIGVQETRYLMDAMEARYGELVKELQRQMPVGKVAETLQRLVEEDISIRDLRTIFGALVAWAPKEKDIVMLTEYVRIAL RRHVCSRFSKNKVWLPVLRLGEGAETLIHESIRQTSAGTYSALENKHSRLLLDKITGAFAENTDAVLLTSIDVRRFLRKI VERDIFALPVLSWQELGDEMNIKVVGTIELIGDELDETT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 0.0 | 82 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 2e-156 | 60 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-156 | 60 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 1e-156 | 60 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-156 | 60 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-156 | 60 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 1e-119 | 49 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 8e-120 | 49 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 6e-120 | 49 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 8e-120 | 49 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 4e-120 | 49 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 5e-119 | 49 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 8e-119 | 49 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 1e-119 | 49 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-115 | 49 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 9e-116 | 49 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 1e-118 | 48 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 2e-118 | 48 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 1e-118 | 48 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 2e-118 | 48 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 1e-117 | 48 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 4e-114 | 46 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 3e-78 | 42 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 5e-78 | 42 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 4e-85 | 42 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 5e-79 | 41 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-79 | 41 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-79 | 41 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-79 | 41 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-78 | 41 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 3e-88 | 41 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 3e-88 | 41 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 1e-88 | 41 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 1e-85 | 41 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 8e-88 | 41 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 8e-88 | 41 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 5e-89 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Y11_35391 | YP_006007038.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0514 | Protein | 7e-157 | 60 |
| Y11_35391 | YP_006007038.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0729 | Protein | 3e-119 | 49 |
| Y11_35391 | YP_006007038.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0813 | Protein | 8e-119 | 48 |
| Y11_35391 | YP_006007038.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0064 | Protein | 9e-118 | 48 |
| Y11_35391 | YP_006007038.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0384 | Protein | 1e-114 | 46 |
| Y11_35391 | YP_006007038.1 | type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) | VFG0198 | Protein | 4e-102 | 46 |
