Gene Information

Name : Y11_30771 (Y11_30771)
Accession : YP_006006576.1
Strain : Yersinia enterocolitica Y11
Genome accession: NC_017564
Putative virulence/resistance : Virulence
Product : type 1 fimbriae anchoring protein FimD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3171308 - 3173761 bp
Length : 2454 bp
Strand : -
Note : -

DNA sequence :
GTGCGGGCCGAAGAGCACTTTAACTCGGCATTGCTGGAAATTGATAACCAGCAACAAAGCCATACTGATCTATCGGTGTT
TGAGCAGGAGCCGAATCAAGCATCCGGCACCTATCGTGTCGACATTTATATCAATAATGAGCTGTTGGATACTCGTGATG
TGGTGTTTAGCATGCAAAAAAATGCCGTAGGTAAAGAGAGCCTCCAGCCCTGCCTGAGTGCCAAAGCATTGGCGGAGATT
GGGGTTAAAATTGAAGCTTTCCCACAACTGGGGGATGGTGAGTGTGCGGATCTTAGCGCTATTCCGCAGGCCAGTGCCGA
GTTTCGTTTGAGTGCGCAGCAGTTGTTGATCCGTATCCCGCAGGCAGCCATCACCGACAAAGCGCGTGGCTATGTAGAAC
CCAGCCAATGGGATGATGGTATTACGGCGTTGTTACTTAATTACAGTGTCAGTGGTGCGCAAAATAACCCCCGTAATAGC
AAAAATAATGATAGCAATAGCCAATATGCCAACCTGCGGCCCGGCTTTAACATTGGCCCGTGGCGACTGAGTAGCTATAT
CACCTGGAATCGCAGTAGTGGCCGTCAGGACCAGTGGGACACCGTGTATACCTATGTACAGCGCAATATTATTGCATTGA
AGAGTCAGTTGATTTTTGGTGATAGCAATTCGCTGACCGATGTGTTCGATGGTGTGCCATTTCGTGGCGTGCAACTGGCT
TCTGATGATGACATGGTGCCCGATAGCTTGAAAGGGTATGCGCCAGTGGTACGTGGTATAGCCCATAGCAATGCTGAAGT
GACTATCCGTCAGAATGGTTATGTCGTTTATCAACATTTTGTCGCACCAGGTGCATTTGAAATCACAGATATGTTTCTAA
CGGGTACCAGTGGTGATCTCTATGTAACGGTAAAAGAAGCGGATGGCAGCGAACAACTGATTGTGGTGCCTTTTGCTTCC
TTACCGGTATTACAGCGGGAAGGGCGACTGAAATATGCACTCACCGGTGGACAATATCGTTCCTACAACAGCCGTATCGA
GAGAACTCCCTTTGTGCAAGGCACGGGCATCTATGGATTGCCTTATGGCATAACAATTTATGGTGGTATTCAGGGCGCGA
GTCGCTATCAATCTTTAGCTTGCGGCCTGGGAGATAATCTGGGGACGTTGGGTGCGGTATCAGTGGATGTCACACATGCC
CAAGCCACCATGCAAAACCAACCACAGAGAAGTGGCCAATCTCTGCGGACTCGATATAGCAAGAATATAGCACAAACAGG
AACCAACATTGCCATTGCGGGTTACCGCTACGCAACCGCAGGTTATTACAACTTGCAAGAGACGCTGGATAGTTATCGTA
AAGGTCAGAATACCGCCCTGGCAGAGCGTCACCGCAATCGTGCTGAGGCGACCATGACTCAGAGTTTATGGCAGGAAATC
GGTTCAGTGTCACTTAGTTTAGTGAATGAGGGTTACTGGAACAGTAATCGACGCCTGCAATCCTACGGAGTGGGCTACAA
CAACAGTTGGCACAAGGTTAGCTATGGTGTGAATTACAGCTATAACCTTAATTTTATGGCCAGTAGTGCAGGTAGCGGTA
AAAAATATGGAAAAGATCAGGTCATTGCTTTCAATATCAGTGTGCCATTAGCCATTTTACTGGGTAACACTTATGCCAGT
TACACCATGAATACCAGCAAGAAGGGGAGTACCACTCATATTGCTGGCCTAAAGGGTACCGCACTGGCTAGTAATAATCT
GAGCTGGAGTGCACAGCAAGGTTATGGTAGCCAGAGGCAAGGTAATAGCGGCAATCTGGCTGCGGATTATCGCGGTACCT
ATGGTGAAATTAACGCAGGTTATGCCTATGACAATGACATGCAGCGAGTGAACTATGGGGTACAGGGTGGGATAGTGGCG
CACAGAGATGGTGTTACCTTTGGTCAACCATTAGGTGAAACTATCGCGCTGGTTAAAGCTCCGGGAGCAAAGGCGGTGGA
ACTGAGCAGCCAGAATGGAGTGAAAACCGATTACCGCGGCTATGCCATTGTGCCTTACATCAGTCCTTACCGTAAAAATA
AGATAGCACTGAACAGTGCGACGCTTTCGGATGATGTGGAGCTTAACCAGAATACCCAGAATGTGGTGCCGACGCGTGGT
GCGATAGTACGAGCCAGCTTTGTTACCCAGATCGGTGGGCGTGCGATGATGACGCTACTGCGCCCTGATGGAGCACCAGT
GCCATTTGGTGCCACCGTGAGCGATATGGCTACCAAGGGCCAGGGTTTTATTGTCGGTGATACCGGGCAGGTTTATCTAA
CCGGGTTGGCAGACAGCGGCCAATTAATTGTGAAATGGGGCCATGACACCTCGCAGCAGTGCCATGTGGATTATTCCCTC
TCTGGAAAAATAGAAACAAATAGCGTTCAGATGCTACACGGACAGTGTGGGTAA

Protein sequence :
MRAEEHFNSALLEIDNQQQSHTDLSVFEQEPNQASGTYRVDIYINNELLDTRDVVFSMQKNAVGKESLQPCLSAKALAEI
GVKIEAFPQLGDGECADLSAIPQASAEFRLSAQQLLIRIPQAAITDKARGYVEPSQWDDGITALLLNYSVSGAQNNPRNS
KNNDSNSQYANLRPGFNIGPWRLSSYITWNRSSGRQDQWDTVYTYVQRNIIALKSQLIFGDSNSLTDVFDGVPFRGVQLA
SDDDMVPDSLKGYAPVVRGIAHSNAEVTIRQNGYVVYQHFVAPGAFEITDMFLTGTSGDLYVTVKEADGSEQLIVVPFAS
LPVLQREGRLKYALTGGQYRSYNSRIERTPFVQGTGIYGLPYGITIYGGIQGASRYQSLACGLGDNLGTLGAVSVDVTHA
QATMQNQPQRSGQSLRTRYSKNIAQTGTNIAIAGYRYATAGYYNLQETLDSYRKGQNTALAERHRNRAEATMTQSLWQEI
GSVSLSLVNEGYWNSNRRLQSYGVGYNNSWHKVSYGVNYSYNLNFMASSAGSGKKYGKDQVIAFNISVPLAILLGNTYAS
YTMNTSKKGSTTHIAGLKGTALASNNLSWSAQQGYGSQRQGNSGNLAADYRGTYGEINAGYAYDNDMQRVNYGVQGGIVA
HRDGVTFGQPLGETIALVKAPGAKAVELSSQNGVKTDYRGYAIVPYISPYRKNKIALNSATLSDDVELNQNTQNVVPTRG
AIVRASFVTQIGGRAMMTLLRPDGAPVPFGATVSDMATKGQGFIVGDTGQVYLTGLADSGQLIVKWGHDTSQQCHVDYSL
SGKIETNSVQMLHGQCG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 1e-146 41
safC NP_454907.1 outer-membrane fimbrial usher protein Not tested SPI-6 Protein 3e-143 41
lpfC NP_709462.1 long polar fimbriae Not tested SHI-2 Protein 2e-144 41
lpfC YP_006098365.1 fimbrial outer membrane usher protein Not tested Tn2411 Protein 5e-146 41
lpfC NP_839216.1 long polar fimbriae Not tested SHI-2 Protein 2e-144 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Y11_30771 YP_006006576.1 type 1 fimbriae anchoring protein FimD VFG0454 Protein 3e-164 43
Y11_30771 YP_006006576.1 type 1 fimbriae anchoring protein FimD VFG0446 Protein 9e-152 43
Y11_30771 YP_006006576.1 type 1 fimbriae anchoring protein FimD VFG0876 Protein 3e-154 41