Gene Information

Name : Y11_22651 (Y11_22651)
Accession : YP_006005764.1
Strain : Yersinia enterocolitica Y11
Genome accession: NC_017564
Putative virulence/resistance : Virulence
Product : fimbriae usher protein StfC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2314508 - 2317048 bp
Length : 2541 bp
Strand : -
Note : -

DNA sequence : 
ATGGTATCCGCTCGTTCTACCATCTCCGGTTTTGCCCGTCGTGATTTATTGCGAATATTGATTGTAGTTGCATTAAGTGG
CAATGCTTATGGTGTGTTGGCCAGCGATGATATTCAGTTTAATACCGATGTATTGGATACCAAGGATCGCGCTAATTTTG
ACCTCAGCCAGTTCTCCCAACGCGGCTACATCATGCCTGGGAATTATAACTTGTTGGTTAGCATGAATAAGCAGGAGCTT
AGTGAACAGCCGATTGTGTTCTACGCCTCAGAAAAAGATGCAAAAAAAAGTGAGGCGTGTTTAACACCCCAGTTAATCGA
GTTGTTGGCATTGAAAGAGGATAGCTTCAAAAAGCTGACCTGGTCGCGTGATGGGGAGTGTCTGGATATTAGCAGCTTAC
CCGGCTTGACCGTGGAAGGTGATTTGGCAAAGTCATCGCTGTACTTGAGTGTGCCACAAGCCTGGCTGGAATACAGCGAA
CCGGATTGGGATCCTCCTTCTCGCTGGGAGGAGGGTATTTCCGGTGTGCTGTTCGATTACAACTTGTTAGGGCAATTGAA
CCGCCAGGAAACGAATAATACCAATAACAATACGTTAAGCGGCAACGGGACCACTGGCGCGAATCTGGGTGCCTGGAGAT
TCCGTGCTGATTGGCAGATGCGTGTCGACCAATCATCGGGTTCATCGACTGAGCGCCAATGGGATTGGAGCCGTTATTAC
GCTTATCGCGCTATCCCGAGTCTGGGAGCAAAGTTGACGTTGGGGGAAGATTTTTTGAATTCCTCCATCTTTGACAGTTT
CCGCTTTAACGGCGCTAGCCTGGCGACGGATGACAATATGTTACCGCCAAATTTACGTGGTTATGCCCCTGAAATTACAG
GAGTTGCCCGTACCAATGCACGGGTAGTTGTCAGTCAGCAAGGGCGTGTGTTGAGTGAAACGCTGGTTGCTGCCGGCCCT
TTTCGTATTCAGAACTTGAACAGTTTTGTCTCTGGGACGCTGGATGTGCGGGTAGAGGAACTTGACGGGCAAGTTCAACA
ATTTCAAGTAAATACCGCCAGTATTCCTTACCTGACCCGCCCCGGAATGGTGCGTTACCGTATCGCTGCCGGTAAGCCTT
CGGATACCGGGCATCGGGCGGAAGGGCCAGTATTTGGCACCGGGGAATTCTCCTGGGGGATCAACAGTGGCTGGTCACTG
TTTGGTGGCGCGATGAGCGGTGAAAACGAATATCAAGCGGCATCTATGGGGATTGGCCGTGACTTGATGGAATTTGGTGC
GGTGTCGGTTGATATGACCCAATCATGGGCAACTTTACCCGAGCAAGGCACTTTGAGCGGTGGCTCTTATCGAGTCAACT
ATTCGAAAAACTTTCAGGAAACAGGCAGTCAGGTGACGTTTGCTGGCTATCGCTTCTCTGAACGTAATTTTATGAGCATG
AGTGAATATCTCGACGCGCGTTATCGCAACAATGACGTGGGTGGCAATAAAGAGATGTACACCATCAGCTTCAATCAACA
ATTTCAGGATCTGGGGCTGAGTGCGTATCTGAACTATAGCCATCAGACCTATTGGGATCGTTCGGCGAATGACCGCTATA
ACCTGGCTCTCTCGCGTTATTTTGATATCGGTAAAGTGAAAAATGTCAGTTTGACCTTCTCTGCTTACCGTAACCGCTAT
AACGAAAGCAATGACGATGGCGTGTATTTGTCTATGTCGATGCCATTTGGTAACAGCGCAACCATCAGTTATAGCGCGAC
GGTGAGTGGCAGTGAACATAGTCAGCGAGTGGGCTATACCGATCGTCTGGATGCTCACAATAACTACCAGATCAATACCG
GGGTAGCACGTAGCGGCGTATTAGTGAGTGGTAACTACAACCACATAGGTAATAGTGCGGATATTAACGCCAATGCCAGT
TATCAGGAGGGGCAATACTCTTCCGTTGGTTTAGGTATTCAGGGCGGCGCAACTATCACGGCTGAAGGTGGCGCTCTACA
TCGGGTGAATACCCTCGGCGGTACCCGATTGTTACTGGATACTCAAGGTGTATCTGGCGTTCCGGTTCAGGGATATGGCT
CATCAATACGCACCAACCAGTTTGGTAAAGCGGTAGTCGGTGATGTGAATAGCTATTACCGCAATCGGGCCAGTATTGAT
ATCGATAACCTGGCTGATGATGTTGAAGCCAGAGGAACCGTAGCACAGGTCACACTGACCGAAGGTGCTATTGGTTATCG
CCGCTTTAATGTGATTTCCGGTGAAAAGGCGATGGCGATGATACGTATGGCAGATGGTACATCACCGCCATTTGGGGCCA
CCGTATTAAATGAAAATCAGCAAGAGACCGGCATTGTTAACGACGATGGTTCCACTTACCTCAGTGGGATCAAAGCTGGC
GAAACCATGTCAGTACGTTGGAATGGTGAGGCACAATGCAGCATTACCTTACCGAAGGCTCTTTCTCCAGCAATACTGGT
GAATCTACTGTTGCCTTGCCAGCCAATAGCCACGGGGGATAAACCTGCGGTATCACAGTAG

Protein sequence : 
MVSARSTISGFARRDLLRILIVVALSGNAYGVLASDDIQFNTDVLDTKDRANFDLSQFSQRGYIMPGNYNLLVSMNKQEL
SEQPIVFYASEKDAKKSEACLTPQLIELLALKEDSFKKLTWSRDGECLDISSLPGLTVEGDLAKSSLYLSVPQAWLEYSE
PDWDPPSRWEEGISGVLFDYNLLGQLNRQETNNTNNNTLSGNGTTGANLGAWRFRADWQMRVDQSSGSSTERQWDWSRYY
AYRAIPSLGAKLTLGEDFLNSSIFDSFRFNGASLATDDNMLPPNLRGYAPEITGVARTNARVVVSQQGRVLSETLVAAGP
FRIQNLNSFVSGTLDVRVEELDGQVQQFQVNTASIPYLTRPGMVRYRIAAGKPSDTGHRAEGPVFGTGEFSWGINSGWSL
FGGAMSGENEYQAASMGIGRDLMEFGAVSVDMTQSWATLPEQGTLSGGSYRVNYSKNFQETGSQVTFAGYRFSERNFMSM
SEYLDARYRNNDVGGNKEMYTISFNQQFQDLGLSAYLNYSHQTYWDRSANDRYNLALSRYFDIGKVKNVSLTFSAYRNRY
NESNDDGVYLSMSMPFGNSATISYSATVSGSEHSQRVGYTDRLDAHNNYQINTGVARSGVLVSGNYNHIGNSADINANAS
YQEGQYSSVGLGIQGGATITAEGGALHRVNTLGGTRLLLDTQGVSGVPVQGYGSSIRTNQFGKAVVGDVNSYYRNRASID
IDNLADDVEARGTVAQVTLTEGAIGYRRFNVISGEKAMAMIRMADGTSPPFGATVLNENQQETGIVNDDGSTYLSGIKAG
ETMSVRWNGEAQCSITLPKALSPAILVNLLLPCQPIATGDKPAVSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 1e-166 47
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 1e-165 47
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 1e-165 47
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 2e-166 47
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 2e-166 47
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 2e-166 47
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 1e-174 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Y11_22651 YP_006005764.1 fimbriae usher protein StfC VFG1548 Protein 7e-167 47
Y11_22651 YP_006005764.1 fimbriae usher protein StfC VFG0884 Protein 9e-167 47
Y11_22651 YP_006005764.1 fimbriae usher protein StfC VFG0895 Protein 8e-167 47