Gene Information

Name : STND_0306 (STND_0306)
Accession : YP_006001878.1
Strain : Streptococcus thermophilus ND03
Genome accession: NC_017563
Putative virulence/resistance : Virulence
Product : TCS response regulator CovR-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 303091 - 303780 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAGAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCGGACAACGGACGCGAAGGACTTGAATTGGCACTTGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTCGAAGTGACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGACTCAATCATGGATATTGTTGCTGGTTTGGATCGTGGAGCTGATGACTATATTATAAAACCATTTGCGATTGA
AGAACTGTTGGCACGTATTCGTGCAACCTTCCGTCGTCAAGATATCGAAGCTACTAAGAAGGCACCAGCTAAAGCGTCAA
CCTATCGCGATTTAAAATTGGATGTTCAAAACCGTGCAGTTGTTCGCGGTGATGAGGTAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTAAGCAATATGAACCAAGTAATGACCCGTGAGGAACTCTTGCTTCAAGTCTGGAAATA
TGATGACGTAATTGAAACAAACGTTGTAGATGTTTATATTCGTTACTTACGTGGGAAAATCGACATTCCAGGTAAGGAAT
CATACATTCAGACAGTACGAGGGATGGGTTACGTTATCCGTGAAAGATGA

Protein sequence : 
MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDIEATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIRER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-35 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein HE999704.1.gene1528. Protein 1e-59 60
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_002758.1121390.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_010079.5776364.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_002952.2859858.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_007622.3794948.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_003923.1003417.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_013450.8614146.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_002951.3238224.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_007793.3914065.p0 Protein 2e-48 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein AE015929.1.gene1106. Protein 2e-45 52
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein BAC0125 Protein 2e-37 44
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein NC_012469.1.7685629. Protein 7e-36 44
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein HE999704.1.gene2815. Protein 6e-40 44
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein AE000516.2.gene3505. Protein 3e-34 43
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein BAC0308 Protein 1e-34 41
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein BAC0111 Protein 2e-33 41
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein AE016830.1.gene1681. Protein 9e-41 41
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein BAC0197 Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein VFG1390 Protein 3e-40 45
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein VFG1389 Protein 8e-34 43
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein VFG0596 Protein 5e-36 42
STND_0306 YP_006001878.1 TCS response regulator CovR-like protein VFG1386 Protein 6e-38 41