Gene Information

Name : XFLM_02790 (XFLM_02790)
Accession : YP_005999923.1
Strain : Xylella fastidiosa GB514
Genome accession: NC_017562
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 586581 - 587996 bp
Length : 1416 bp
Strand : -
Note : COG0305 Replicative DNA helicase

DNA sequence :
ATGTCTGCTCGTCCCGGCTTCCATTCCAATTATCAACGCGAGCCTGGCGATCGTGAAGCGCTGCGTGTTGATCCGTTGCG
CGTCCCTCCTCATTCTGTTGAGGCTGAGCAGGCCGTATTGGGGGGGCTGATGTTGGCGCCCGATGCGTTGGATAAGATCA
ATGATCGGTTAACGGAGAACGATTTTTACCGTCGTGATCACCGCATGATTTACCGTGCGATCTGCGATTTGTCTAGGAAG
ATGCGACCATTCGATGTCGTCACTCTAGGAGAATGGTTTGAGTCGCAGGGGATGCTGGAGGTTGTTGATCATGGTGCTTA
TTTGATTGAGCTGGCGAGTACCACGCCCTCGGCCGCCAATATCGTTGCCTATGCTGAAATCGTGCGCGATAAGGCAGTAC
TGCGTCAGTTGATTGAGGTTGGAACCAAGATCGTTAACGATGGATTCCAACCAGAGGGCCGCGAAAGTATTGATTTGCTT
GCTGAGGCTGAAAAGTCGGTGTTCGGAATTGCCGAGACTGGTGCGCGTGGTCGCATTGATTTTGTGGCAATGCCTGGTGC
GTTGAAGGATGCTTTTGAGCAGCTGCGTGATCGTTTTGAGAACGGTAGTAATGTGACCGGGCTTCCAACCGGATATAACG
ATTTTGACGCGATGAGCGCAGGTTTACAGCCGACTGATTTGATCGTCTTGGCTGCGCGTCCGGCAATGGGGAAAACAACC
TTTGCGTTGAATATCGCTGAGTATGTTGCGATTAAATCGAAAAAGACGGTGGCTGTATTTTCAATGGAAATGTCTGCTGC
ACAGTTGGCGATGCGCTTGATTTCTTCTAATGGTCGTATCAATGCGCAGCGTCTGCGTACGGGTCAGCTTGAGGACGAAG
ATTGGGCACGTGTGACTGGAGCAATCAAGATGTTGAAGGAGACTAAAATTTTTATTGATGATACCCCTGGTGTGTCGCCA
GAGGTATTGCGCTCCAAGTGCCGTCGTTTGAAGCGTGAGCATGATCTTGGTCTAGTGGTGGTCGATTATCTGCAGTTGAT
GTCTGTCCCTGGGAACAGTGAGAACCGTGCTACCGAGATCTCGGAAATTTCGCGCTCTCTCAAGGGGTTGGCTAAGGAGT
TGAATGTTCCAGTGATTGCATTGTCACAGTTGAACCGTTCTTTGGAGACGCGCACTGACAAGCATCCCGTCATGGCTGAT
CTGCGTGAATCTGGTGCGATTGAGCAGGATGCAGACATGATCGTTTTTATCTACCGGGATGAGTATTACAACAAAGATTC
TCCGGATAAGGGTTTGGCGGAAATCATCATCGGTAAGCATCGCAGCGGCCCGACAGGTTCGTGCAAGTTGAAGTTCTTTG
GCGAATACACCCGTTTCGATAATCTGGCCCACGACTCAATTGGCACATTTGAGTAG

Protein sequence :
MSARPGFHSNYQREPGDREALRVDPLRVPPHSVEAEQAVLGGLMLAPDALDKINDRLTENDFYRRDHRMIYRAICDLSRK
MRPFDVVTLGEWFESQGMLEVVDHGAYLIELASTTPSAANIVAYAEIVRDKAVLRQLIEVGTKIVNDGFQPEGRESIDLL
AEAEKSVFGIAETGARGRIDFVAMPGALKDAFEQLRDRFENGSNVTGLPTGYNDFDAMSAGLQPTDLIVLAARPAMGKTT
FALNIAEYVAIKSKKTVAVFSMEMSAAQLAMRLISSNGRINAQRLRTGQLEDEDWARVTGAIKMLKETKIFIDDTPGVSP
EVLRSKCRRLKREHDLGLVVVDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKHPVMAD
LRESGAIEQDADMIVFIYRDEYYNKDSPDKGLAEIIIGKHRSGPTGSCKLKFFGEYTRFDNLAHDSIGTFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 2e-94 49
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 8e-86 46
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-85 46
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 1e-76 46
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 1e-76 46
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-81 45
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 3e-85 45
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-79 45