Gene Information

Name : XFLM_10825 (XFLM_10825)
Accession : YP_006001397.1
Strain : Xylella fastidiosa GB514
Genome accession: NC_017562
Putative virulence/resistance : Virulence
Product : nitrogen metabolism transcriptional regulator, NtrC, Fis family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2322179 - 2323606 bp
Length : 1428 bp
Strand : +
Note : COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
ATGGTTGAGATTGATGCGACTTCCCCACGCATCTGGGTGGTTGACGACGATCGCTCGGTACGCTTCGTGTTATCTACTGC
ACTGCGTGATGCAGGCTATATCGTGGAAGGTTTCGAGAGTACTTGCGCAGCGTTGCAAGCCCTAGCAGCCTCCCCAATCC
CAGACTTATTGTTCACCGACGTACGCATGCCTGGTGATGATGGTTTGATTTTGCTGGACAAGCTCAAAGCACGCCATCCG
CACCTTCCAGTAATTGTTATGTCTGCCTACACCGATGTGGCTAGCACTGCCGGTGCATTTCGCAGTGGTGCACATGAATT
CTTGTCCAAGCCATTTGATCTAGACGATGCGGTTGCGTTGGCAGCTCGTGTGTTGCCACATACACAAGGATCTCATGGGG
GATCACCCATATTGCCTGCTGCCAACAGTAATCCCGTCTTGATCGGCAGCACTCCGGTGATGCGTGCTTTGTTCCGTGCA
ATCGGACGGTTGGCGCAGGCACCACTCTCGGTGCTGATTAACGGTGAAACAGGTACTGGCAAAGAGCTCGTTGCACGTGC
GTTACACAACGAATCTCCGCGTGCGCAGGCGCCGTTCGTTGCGCTGAATGCTGCGGCGATTCCAACCGAGCTTTTGGAGA
GCGAGTTGTTCGGTCACGAGGCCGGCGCGTTTACAGGAGCGACCAAACGTCATATTGGCCGCTTTGAGCAAGCCGATGGC
GGCACTTTATTTTTGGATGAAATCGGCGATATGCCGTTGTCTTTGCAGACGAGACTGTTACGTGTACTGGCTGAAAATGA
ATTCTTCCGGGTCGGGGGCCGCGAACTGATCCGTGTCAATGTCCGTGTGATTACTGCGACCCATCAGGATCTTGATATGT
TGGTCGAGCAGGGGCGTTTTCGTTCCGATCTCTTGCACCGTTTAGATGTAGTGCGCTTGCAACTGCCATCGTTACGTGAG
CGGCGTGATGATGTGGCACAGTTGGCCGAGAATTTTTTGGTAATGGCTGGGCACAAGCTGGATATCTCAGTTAAACGTTT
GTCTGCCGATGCGCTAGAGATACTGCGTCGCTACGATTGGCCAGGTAATGTCCGTGAGCTCGAAAATATTTGCTGGCGAT
TAGCTGCTTTGGTGAACACTGAGACAATTGATGCCAATGATGTTGAAGCTGTGTTAACACATGGCAAGCGCAAGCGTTGT
AACACTGAAAGCGATTGGGATATCCATTTAGCCAAATGGGCGGAAGACCGCTTAGCTGCAGGCGCAACTGCTGTGCATGC
CGAAGCTCGCAAATGTTTGGACCGAACGCTACTGGATGTGGCATTGCGTTTGACGCAGGGCCGTCGTGCCGAAGCAGCTG
CACGTCTTGGTCTGGGTCGTAACACGTTGACCCGCAAGCTTGGCTCAAGTCAACGTCGTAGGAGGTAA

Protein sequence : 
MVEIDATSPRIWVVDDDRSVRFVLSTALRDAGYIVEGFESTCAALQALAASPIPDLLFTDVRMPGDDGLILLDKLKARHP
HLPVIVMSAYTDVASTAGAFRSGAHEFLSKPFDLDDAVALAARVLPHTQGSHGGSPILPAANSNPVLIGSTPVMRALFRA
IGRLAQAPLSVLINGETGTGKELVARALHNESPRAQAPFVALNAAAIPTELLESELFGHEAGAFTGATKRHIGRFEQADG
GTLFLDEIGDMPLSLQTRLLRVLAENEFFRVGGRELIRVNVRVITATHQDLDMLVEQGRFRSDLLHRLDVVRLQLPSLRE
RRDDVAQLAENFLVMAGHKLDISVKRLSADALEILRRYDWPGNVRELENICWRLAALVNTETIDANDVEAVLTHGKRKRC
NTESDWDIHLAKWAEDRLAAGATAVHAEARKCLDRTLLDVALRLTQGRRAEAAARLGLGRNTLTRKLGSSQRRRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-48 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-48 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XFLM_10825 YP_006001397.1 nitrogen metabolism transcriptional regulator, NtrC, Fis family protein BAC0467 Protein 4e-69 46
XFLM_10825 YP_006001397.1 nitrogen metabolism transcriptional regulator, NtrC, Fis family protein BAC0089 Protein 8e-64 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XFLM_10825 YP_006001397.1 nitrogen metabolism transcriptional regulator, NtrC, Fis family protein VFG1249 Protein 2e-60 43
XFLM_10825 YP_006001397.1 nitrogen metabolism transcriptional regulator, NtrC, Fis family protein VFG1214 Protein 4e-59 41