Gene Information

Name : XFLM_05560 (XFLM_05560)
Accession : YP_006000417.1
Strain : Xylella fastidiosa GB514
Genome accession: NC_017562
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone, N-terminal
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1201773 - 1202573 bp
Length : 801 bp
Strand : -
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence :
ATGGTTCCTCCGATCATGAGAACTCAACAAAGCAAAAGCATCTGGGTGCTTGCCCTAAGCACGTGCTTATGCGCCCAATC
CGCTTTCGCCGGCATCATCATCGCTGGGACCAGGGTTGTCTATCCCGCACAATCACGTGATGTCACCGTACAAGTGACCA
ACACTGGGGAAAACCCTGCACTGTTACAAACCTGGATGGATGACGGCGACTCCAAGCAAACACCTGACGAAAGTAAAGCC
CCCTTTCTGGTGACGCCTCCTATCAGTCGAGTCGAACCTGGATCAGGCCAAGCGTTGCGTTTATTTTTTACGGGCACCAC
AACGCTTCCAGAAGATCGGGAAAGCTTATTCTGGTTAAACGTTCTCGAGATTCCACCTACTCCGTTAGAATATTCCGATA
AAAATGCTCCAACTTCCGCTGATAAATCAGACAGCCAGAACTACCTGCAACTCGCATTTCGCTCGCGGATCAAGGTGTTC
TATCGTCCATCTAAACTCAAAGGAACAGCAAACGAAGCGCCCGCCTCGCTCAGTTGGAAAGTGAATTCCAACGGGCAATT
GCTAGTGAGCAACCCCACACCCTATCACGTCACGCTCACCCGAACCGAAGCGCTGGATGACAAAGGAAGGAAAGAGACAA
TTGACAAAATTGGAGTGTTGTTAACCCCTGGCCAGGAATACACATTCAAAGCGAACAAATCGGATGGACTCTCATCACGG
TGGAAAAGTGTGTCTTTTACCTACATTAATGATTATGGCGGAATAAAAACGCTCAGCAGTAATTTGGGATCAATGCCTTA
A

Protein sequence :
MVPPIMRTQQSKSIWVLALSTCLCAQSAFAGIIIAGTRVVYPAQSRDVTVQVTNTGENPALLQTWMDDGDSKQTPDESKA
PFLVTPPISRVEPGSGQALRLFFTGTTTLPEDRESLFWLNVLEIPPTPLEYSDKNAPTSADKSDSQNYLQLAFRSRIKVF
YRPSKLKGTANEAPASLSWKVNSNGQLLVSNPTPYHVTLTRTEALDDKGRKETIDKIGVLLTPGQEYTFKANKSDGLSSR
WKSVSFTYINDYGGIKTLSSNLGSMP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 3e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XFLM_05560 YP_006000417.1 Pili assembly chaperone, N-terminal VFG0007 Protein 8e-39 42