Gene Information

Name : PAGR_g4173 (PAGR_g4173)
Accession : YP_005994878.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Virulence
Product : virulence membrane protein PagC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4571738 - 4572298 bp
Length : 561 bp
Strand : -
Note : -

DNA sequence : 
ATGAACAAGGTGATTATTTCCGCTATTTTCTGTGCGCTGCTGAGTGGTGCGGTGCCCGCAGTGGCAAGTCAAACGCTGTC
TGTAGGCTATGCGCAGAGTAAAGTTGAAGATTTTAAAAATATGCCCGGTGTGAATCTGCAATATCGTTATGAGTGGGACT
CGCCGGTTAGCGTAGTGGCCTCTTTCACCACTCTGGAGAACAGTGAGGACAGCAACAGTTCTTTTTTTCAGCGCCATACG
TCCGATCACGTAAGCGCAAAATATTATTCTTTACTGGCGGGGCCGGCATATCGTCTGAATCAACGGGTCAGTGTTTATGC
GCAGGCCGGCTTTTCCCATGCCGCGATGAGCCGCCAGTATCACGGCTATGATTCTCAGGGAATGCCTCAGGACATCCAGT
TTTCGGAGACGACCAATGCGTTGGCTTACGGGGCCGGTATTATCATTAACCCGGTTGATTATCTGTCTGTAACCCTGGGT
TACGAAGGTTCCCGCACCCGGGTTGAAGGAGAGCAACGCGCTGTTAACGGCGTTAATCTGGGGGTGGGTTACCGTTTCTG
A

Protein sequence : 
MNKVIISAIFCALLSGAVPAVASQTLSVGYAQSKVEDFKNMPGVNLQYRYEWDSPVSVVASFTTLENSEDSNSSFFQRHT
SDHVSAKYYSLLAGPAYRLNQRVSVYAQAGFSHAAMSRQYHGYDSQGMPQDIQFSETTNALAYGAGIIINPVDYLSVTLG
YEGSRTRVEGEQRAVNGVNLGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 3e-29 47
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 2e-29 46
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 1e-28 46
pagC AGI37348.1 PagC Virulence OI-122 Protein 5e-21 45
pagC AGI37351.1 PagC Virulence OI-122 Protein 3e-21 45
pagC AGI37350.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37341.1 PagC Virulence OI-122 Protein 3e-20 43
pagC AGI37340.1 PagC Virulence OI-122 Protein 6e-21 43
pagC AGI37349.1 PagC Virulence OI-122 Protein 3e-20 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 6e-21 43
pagC AGI37352.1 PagC Virulence OI-122 Protein 3e-20 43
pagC AGI37337.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37342.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37344.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37346.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37353.1 PagC Virulence OI-122 Protein 5e-20 42
pagC AGI37343.1 PagC Virulence OI-122 Protein 5e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g4173 YP_005994878.1 virulence membrane protein PagC VFG0442 Protein 2e-20 41