Gene Information

Name : PAGR_g3994 (PAGR_g3994)
Accession : YP_005994699.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator SoxS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4344273 - 4344698 bp
Length : 426 bp
Strand : +
Note : -

DNA sequence : 
ATGATACAAGAAGAGATCATTCATTCACTGACGCACTGGATTGACCAAAACCTGGATAAGAGCCTGTCAATTGACGAAGT
CGCCGCCAAATCAGGCTATTCGAAATGGCATCTGCAACGTATGTTCCGTAGCGTGACGAAACAGACGTTGGGTGGCTATA
TTCGCGAACGCCGCCTGACGCTGGCCGCTGAAGCGCTGCGACAAACGCAGCGGCCAGTGTTTGATATTGCGATGCAATAT
GGCTATGACTCGCAACAGACATTCTCACGCGTTTTTCGTCGCCAGTTTTCACAAACGCCCACGGCTTATCGCCACGCGAT
GCGCCGCCAGGCCATCCAGCGTCCGCGTTTGATGCGCTTTGACTGCAGCGACACGATGACCAGCTTTACCCAGCGGACAA
CGGGAGAATGCTGTCCGGTTAGCTGA

Protein sequence : 
MIQEEIIHSLTHWIDQNLDKSLSIDEVAAKSGYSKWHLQRMFRSVTKQTLGGYIRERRLTLAAEALRQTQRPVFDIAMQY
GYDSQQTFSRVFRRQFSQTPTAYRHAMRRQAIQRPRLMRFDCSDTMTSFTQRTTGECCPVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 1e-33 66
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-23 48
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-23 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS CP000647.1.gene4499. Protein 8e-35 68
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS BAC0371 Protein 1e-33 67
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS NC_002695.1.914293.p Protein 1e-33 67
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS CP001918.1.gene327.p Protein 8e-35 67
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS CP000034.1.gene4505. Protein 2e-33 66
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS CP001138.1.gene4488. Protein 4e-34 66
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS CP001138.1.gene612.p Protein 4e-27 50
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS NC_010558.1.6276025. Protein 1e-23 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS VFG0585 Protein 4e-34 66
PAGR_g3994 YP_005994699.1 AraC family transcriptional regulator SoxS VFG1038 Protein 1e-23 48