Gene Information

Name : PAGR_g3924 (PAGR_g3924)
Accession : YP_005994629.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Virulence
Product : L-lysine 6-monooxygenase IucD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4260503 - 4261837 bp
Length : 1335 bp
Strand : -
Note : -

DNA sequence : 
ATGACAAACACTGTTGATTTTATTGGCGTTGGCATTGGCCCGTTTAACCTGAGTATCGCGGCGCTGGCACACGAAGCTGA
AGGCTTTACCAGCCAGTTTTTAGACAGCCGCCCAGATTTTGCCTGGCATCCCGGTATGCTGGTGCCTGACTGCCATATGC
AGACCTCGTTTTTAAAAGATCTGGTCTCCGCGGTCGCGCCCACCAGCCCGTTCAGCTTTGTGAACTATCTGGTGAAGCGT
AAAAAGTTTTACCGCTTTATGACTACCGAGTTACGTACCGTCTCGCGCGATGAGTTTTCCGACTATCTGCGCTGGGCTGC
CGAGGGCATGAACAACCTGCGCTTTAATCACACGGTGGAACGCATCGATTTTGATGAGGCCAATAAACGCTTTGTGATTC
GCAGTAACGGCGGGGAAAGCTATGCCCGCAACATCTGTCTGGGCATTGGCAAGCAGCCCTACCTGCCGCCCTGCGTAAAC
CGCATCAGCGCCACCTGTTTCCATGCCAGCGAAATGAGCCTGCGTAAACCCGACCTGCGCGGCAAGCGTGTGGCGGTGAT
TGGCGGCGGTCAGAGTGGTGCCGATCTGTTCCTCAACGCCTTCCGGGGTGAATGGGGCGAACCGGCTGAGGTCAGTTGGA
TATCACGCCGCAACAATTTTAACGCCCTGGATGAGGCCGCTTTTGCCAACGAGTACTTCACGCCAGAATACGTTTCCAGC
TTTGTCGGTCTGAACGAGGCTGCCCGACAGAAAATGCTGGCTGAACAGAAGATGACCTCGGACGGCATCACGGCAGATTC
CCTGCTGACGATTTATCGCGAGCTGTATCATCGCTTTGAAGTGCAGCGTCAGCCGCGCAATGCGCACCTGCTGCCGAGCC
GCTCGGTCATTGAACTCAACAGTCATCACCAGGGCTGGCAGCTTCAGTTGCAGCATCAGCTTGACCAGGGCTACGACCTT
ATCGAATGCGATGTGGTGATTTTCGCCACCGGCTACCGGCCTGCGCTGCCAGAACTGCTCTCCCCCCTGATGAGCCGCCT
GACTATGAAAGATGAGTGCACGTTCAGCGTGCGTGAGGACTTCACGCTTGAGTGGAACGGGCCAAAAGAAAATAACATCT
TTGCGGTGAACGCCAGTATGCAAACCCACGGTATCGCGGAGCCTCAGCTCAGCCTGATGGCATGGCGATCCGCCCGTATT
CTGAATCGCGCACTGGGGCGCGATTTGTTCGATCTCAGCACGCCGCCCGCCCTGATCCAGTGGCGCAGCGTCAGCCGGGA
AAAACCGCAGCATGGCGCTGCGTCCACTAAAAACTATACCGAGTCCTTGGGGTAA

Protein sequence : 
MTNTVDFIGVGIGPFNLSIAALAHEAEGFTSQFLDSRPDFAWHPGMLVPDCHMQTSFLKDLVSAVAPTSPFSFVNYLVKR
KKFYRFMTTELRTVSRDEFSDYLRWAAEGMNNLRFNHTVERIDFDEANKRFVIRSNGGESYARNICLGIGKQPYLPPCVN
RISATCFHASEMSLRKPDLRGKRVAVIGGGQSGADLFLNAFRGEWGEPAEVSWISRRNNFNALDEAAFANEYFTPEYVSS
FVGLNEAARQKMLAEQKMTSDGITADSLLTIYRELYHRFEVQRQPRNAHLLPSRSVIELNSHHQGWQLQLQHQLDQGYDL
IECDVVIFATGYRPALPELLSPLMSRLTMKDECTFSVREDFTLEWNGPKENNIFAVNASMQTHGIAEPQLSLMAWRSARI
LNRALGRDLFDLSTPPALIQWRSVSREKPQHGAASTKNYTESLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iucD NP_839220.1 lysine:N6-hydroxylase Virulence SHI-2 Protein 1e-159 74
iucD NP_709457.1 lysine:N6-hydroxylase Virulence SHI-2 Protein 1e-159 74
iucD YP_002414043.1 L-lysine 6-monooxygenase Virulence Not named Protein 6e-160 74
iucD AAD44749.1 IucD Virulence SHI-2 Protein 9e-160 74
iucD AAK71634.1 IucD Virulence SHI-3 Protein 4e-158 73

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g3924 YP_005994629.1 L-lysine 6-monooxygenase IucD VFG0618 Protein 5e-160 74
PAGR_g3924 YP_005994629.1 L-lysine 6-monooxygenase IucD VFG0937 Protein 3e-160 74
PAGR_g3924 YP_005994629.1 L-lysine 6-monooxygenase IucD VFG1084 Protein 2e-158 73