Gene Information

Name : PAGR_g3659 (PAGR_g3659)
Accession : YP_005994368.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3975963 - 3977216 bp
Length : 1254 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTCTGAGTGATGTGAAGGTTCGTTCGGCTAAGCCTGAAGCAAAAGCCTATAAACTTACTGACGGCGACGGTATGGT
TTTGCTGGTTCACCCTAACGGCTCCAAATACTGGCGGCTACGTTATCGCTTCGGTGGTAAAGAGAAGATGTTGGCGCTGG
GGAAATACCCTGAAGTGTCGCTGGCGGATGCCCGGGCACGCCGGGATGAAGCCCGTAAGCTATTAGCTAACGGCGTCGAC
CCTAGTGAGAATAAGAAAGCTGCTAAGGTAGAACAAGAGCAGGAAGCGATAACGTTTGAAGTGGTTGCCCGAGAATGGCA
TGCCAGCAATCAGAAGTGGTCCGCATCGCATAGCGCTCGTGTTTTGAAAAGTCTGGAGGATAATCTTTTTGATGCCATTG
GTAAGCGGAACATTGCGGAACTGAAGACGCGGGATCTTCTTGTACCCATCAAAGCGGTGGAATCATCCGGACGACTCGAA
GTTGCGGCTCGTTTGCAACAGCGGACTACCGCGATTATGCGGTTTGCAGTGCAGAGTGGTTTAATCGACTACAACCCCGC
GCAAGAGATTGCTGGCGCGGTTGCTACGGCGAAAAGACAGCACCGTGCTGCTCTGGAGCTTAACCGCATTCCTGAATTGC
TTCATCGCATTGATCACTATTCTGGCAGACCCTTAACTCGATTGGCTGTTGAACTCACTTTGTTAGTTTTCATCCGTTCA
AGCGAGCTGCGTTTTGCCCGTTGGACAGAAGTGGATTTTGAAACGGCTATGTGGACGATCCCTGGTGAGCGTGAACCGCT
GGAAGGTGTAAAGCATTCTCAGCGTGGTTCGAAGATGAAGACTCCTCACCTTGTTCCTTTGTCGCGGCAAGCAGTAGCCA
TTCTGGAAAAGATCAAAAGCATGAATGGGAATCGAGAGCTGATTTTCGTAGGCGATCACGATCCCCGTAAGCCGATGAGT
GAGAATACGGTGAACAAGGCTCTTCGAGTGATGGGCTATGACACAAAAACGGAAGTCTGTGGGCATGGGGTCAGGACGAT
GGCGTGTAGTTCGTTGATTGAGTCGGGGCTGTGGTCGAGAGATGCGGTAGAGCGGCAGATGAGTCACCAGGAGCGTAACT
CAGTACGTGCAGCTTATATCCATAAGGCCGAGCACTTGGATGAACGCAGACTGATGTTGCAGTGGTGGGCGGATTATCTG
GATGCTAATCGGGTGAAGGGGATAAGTCCGTTTGATTTTTCGAAAAATAATTGA

Protein sequence : 
MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVSLADARARRDEARKLLANGVD
PSENKKAAKVEQEQEAITFEVVAREWHASNQKWSASHSARVLKSLEDNLFDAIGKRNIAELKTRDLLVPIKAVESSGRLE
VAARLQQRTTAIMRFAVQSGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS
SELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMKTPHLVPLSRQAVAILEKIKSMNGNRELIFVGDHDPRKPMS
ENTVNKALRVMGYDTKTEVCGHGVRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYL
DANRVKGISPFDFSKNN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-147 79
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-145 70
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 5e-145 70
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 7e-145 70
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-145 70
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-145 70
int AAK00456.1 Int Not tested SHI-1 Protein 9e-136 70
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 4e-144 70
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-143 70
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 6e-144 70
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-142 70
int AAK16198.1 Int Not tested PAI-I AL862 Protein 4e-144 70
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-143 69
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-143 69
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-143 69
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-143 69
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 9e-144 69
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 7e-144 69
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 9e-144 69
int AAL51028.1 CP4-like integrase Not tested LEE Protein 7e-144 69
int-phe AAL60261.1 Int-phe Not tested LEE Protein 7e-144 69
int CAC81896.1 integrase Not tested LEE II Protein 4e-134 69
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 9e-128 63
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 9e-128 63
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-116 59
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-81 57
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-94 56
int YP_002346908.1 integrase Not tested HPI Protein 3e-108 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 3e-108 55
int2 NP_993013.1 integrase Not tested HPI Protein 3e-108 55
int CAA21384.1 - Not tested HPI Protein 3e-108 55
int CAA08754.1 integrase Not tested HPI Protein 8e-109 55
int CAB59974.1 integrase Not tested HPI Protein 1e-109 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-110 55
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-110 55
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-105 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 5e-104 53
int AAD44730.1 Int Not tested SHI-2 Protein 8e-83 44
int CAC39282.1 integrase Not tested LPA Protein 2e-83 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-83 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-81 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-81 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-81 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-81 43
int ACU09430.1 integrase Not tested LEE Protein 1e-81 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-81 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-81 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-70 41
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 7e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g3659 YP_005994368.1 integrase VFG1536 Protein 1e-147 79
PAGR_g3659 YP_005994368.1 integrase VFG0626 Protein 1e-145 70
PAGR_g3659 YP_005994368.1 integrase VFG1693 Protein 6e-144 70
PAGR_g3659 YP_005994368.1 integrase VFG0598 Protein 9e-82 44
PAGR_g3659 YP_005994368.1 integrase VFG0783 Protein 8e-82 43