Gene Information

Name : PAGR_g3000 (PAGR_g3000)
Accession : YP_005993716.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Virulence
Product : pathogenicity Island protein YbgA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3251282 - 3252241 bp
Length : 960 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTGAGAAAATTCCGGTTGGAATCAGCGCTTGTCTGCTTGGTGAGAGCGTCAGATTTGATGGCGGCCATAAGCGCCT
GGCTTTCGCTACTGATCAACTCACCCCTTTTGTACGTTTTGAACCTGTCTGCCCCGAAATGGCGATTGGCCTTCCTACGC
CTCGCCCGGCCTTACGCCTCGTTAAAATGGGCGATGATGACGCTCTGCACCTGTGCTTCAGCAAAGAGGGCGGAGAGGAC
ATCACCGATAAAATGCGCGACTGGTCCGAAAACCGCGTTAAATCCCTTCATCATCTCTGTGGCTACATCCTGTGCGCAAA
ATCACCCAGCTGCGGCATGGAACGGGTCAGGATTTATGAACCCGCCACCAACAATAACCGCAAAGCAGGCACCGGCATTT
TTACCGCCTTTTTGCAGCGTGAAATGCCCTGGCTACCGCTTGAAGAAGATGGTCGCCTTAACGATCCCACCCTGCGCGAA
AATTTTATTGGCCGGATTTGTGCCCTGCATGAGTTTAATCAGATGTGGAAACAGGGCCTGACTCGTCACAACCTGATGGC
TTTTCACAGCCGCTACAAGCTGCTGCTGTTGGCGCATTCCCAGAAGAAATACCGTGAGCTGGGGCCGTTTGTTGCCTCAA
TGAACCAGTGGGAATCGTTGGAGGCTTTTGCCTTTGAATACCGCAGCCGCCTGATGGATTTGATGTCACAGCCCGCGTCC
CGCACGAATCACACTAACGTTTTGATGCACGTTCAGGGTTATTTCCGTAGTCAGTTAAGCTCTCCTCAGCGCAAAGAGCT
GACGTCGCTGATTGACTGCTACCGGCAGGGAACGCAACCGCTGTTAGCACCCATTACAATTCTTAAGCACTATATGGCGG
AATATCCGCACCCCTGGCTGACGCAGCAGCGTTACTTCGATCCTTACCCCGAAGCCCTGCGCCTGCGATACGGACAATGA

Protein sequence : 
MSEKIPVGISACLLGESVRFDGGHKRLAFATDQLTPFVRFEPVCPEMAIGLPTPRPALRLVKMGDDDALHLCFSKEGGED
ITDKMRDWSENRVKSLHHLCGYILCAKSPSCGMERVRIYEPATNNNRKAGTGIFTAFLQREMPWLPLEEDGRLNDPTLRE
NFIGRICALHEFNQMWKQGLTRHNLMAFHSRYKLLLLAHSQKKYRELGPFVASMNQWESLEAFAFEYRSRLMDLMSQPAS
RTNHTNVLMHVQGYFRSQLSSPQRKELTSLIDCYRQGTQPLLAPITILKHYMAEYPHPWLTQQRYFDPYPEALRLRYGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 4e-91 57
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 3e-91 57
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 3e-91 57
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 3e-91 57
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 2e-91 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g3000 YP_005993716.1 pathogenicity Island protein YbgA VFG0490 Protein 1e-91 57