Gene Information

Name : PAGR_g1992 (PAGR_g1992)
Accession : YP_005992727.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III TopB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2161988 - 2163904 bp
Length : 1917 bp
Strand : +
Note : -

DNA sequence :
ATGCGTTTGTTTATTGCAGAGAAACCCAGCCTTGGACGGGCCATTGCCGATGTACTGCCTAAACCGCACCGGCGTGGTGA
GGGCTTTATCGCCTGCGGCAATGACCAGATTGTCACCTGGTGCGTGGGGCATTTACTGGAGCAGGCGCAGCCTGATGTGT
ACGACAGCCGCTATGCGCGCTGGTCGCTGGTCGATCTGCCGATTATTCCTGAAAAATGGCGTTTGCAGCCGCGTCCTTCG
GTGGCAAAACAACTCAAAGTGGTGGAAGGCTTACTCGCCCAGGCCGATGAAGTGGTGCACGCCGGCGACCCGGACAGGGA
AGGCCAGCTGCTTGTGGATGAAGTGCTGGATTACCTTCAGCTTCCCGCTGAGAAACGCAGTAAAGTGCAACGCTGTCTGA
TTAACGATCTCAACCCACAGGCTGTCGAGCGGGCTATCAACCGGCTGCGCGAGAATCGCGAATTTATTCCCCTCTGCGTG
TCCGCGCTGGCGCGAGCACGTGCCGACTGGCTTTACGGTATTAATATGACCCGCGCCTGGACGCTGCTGGGCCGGAATGC
GGGCTATGATGGCGTGTTGTCCGTTGGACGCGTACAAACGCCGGTGTTGGGGCTGGTGGTGCGACGGGATGAAGAGATCG
CGAATTTCGTCCCGAAGGATTACTTTGAAGTGAAAGCGCACATCGTCACGCCGGATGAGAGCCGGTTTACCGCCAACTGG
ATCCCCAGTGAAGCCTGTGAACCCTGGCAGGATGAAGAAGGTCGCCTGCTGAAACGCTCACTGGCGGAACATGTGGTGGC
GCGCATCAGCGGTCAGCCCGCTATCGTTACCGCCTACAGTGACAAGCGAGAAAACGACATTGCGCCGTTGCCGTTTTCAC
TCTCCAGCCTGCAAATCGAGGCGGCAAAGCGCTTTGGTTTGAGTGCACAGGCGGTGCTGGACATCTGCCAGCGGTTATAT
GAAACCCACAAGCTGATCACCTATCCACGTTCTGATAGCCGCTACTTACCCGATGAGCATTTTGCCGGCCGTCATGCGGT
GCTCAATGCGATCCAGTCCCATCAACCCGATCTTACTCCACCAGCAGACTTTGATGCAGATCGAAAAAATCGCTGTTGGG
ATGACAAAAAAGTGGATGCGCACCACGCCATTATTCCTACCGCGCGCGCCAGCGCAGTGAAACTTAACGAAAACGAACAG
CAGATTTATGGACTGGTTGCGCGTCAGTATTTGATGCAGTTTTGTCCGGATGCCGTGTTCCGCAAATGCACCATCGATCT
GGATATCGCGGGCGGTAAATTCGTGGCTAAAGCGCGCTTTCTGGCGGAGGCGGGCTGGCGTGCGCTGTTGGGTGGCAAAG
AGCGCGATGAAGAAAACGATGGCATGCCGCTGCCTGTTGTAGCGAAAGACGATGAGCTGCTGTGCGAGCGGGGTGAGGTG
CTGGCGAAACAGACACAACCGCCACGCCACTTTACCGACGCGACCTTGCTTTCGGCCATGACCGGCATTGCGCGCTTTGT
GCAGGATAAAGAATTAAAGAAAGTGCTGCGTGCGACCGATGGTTTAGGAACGGAAGCCACGCGCGCAGGCATTATTGAAT
TACTGTTCCGTCGTTCGTTTTTGCATAAGAAAGGGCGCTATATTCATTCTACTGATGCAGGCAAAGCGCTGATCCACTCG
CTACCGGATCTCGCCGCCAGGCCGGACATGACGGCGCAATGGGAATCAACCCTGACGCGTATCAGTGAAAAGGCCTGTCG
CTATGATGAATTTATGCAACCCCTGGTGCAGACGCTGAGCGGGCTTATTCAGCAGGCGCGACAGCAGCCCTCGGGACAGG
CGTTTCGTGGTTTACCGTCCACCGGCCAAAAACGTCCACCGCGTAAAGCAGGGCGTAAAACGAAGGAAACTGAATAA

Protein sequence :
MRLFIAEKPSLGRAIADVLPKPHRRGEGFIACGNDQIVTWCVGHLLEQAQPDVYDSRYARWSLVDLPIIPEKWRLQPRPS
VAKQLKVVEGLLAQADEVVHAGDPDREGQLLVDEVLDYLQLPAEKRSKVQRCLINDLNPQAVERAINRLRENREFIPLCV
SALARARADWLYGINMTRAWTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIANFVPKDYFEVKAHIVTPDESRFTANW
IPSEACEPWQDEEGRLLKRSLAEHVVARISGQPAIVTAYSDKRENDIAPLPFSLSSLQIEAAKRFGLSAQAVLDICQRLY
ETHKLITYPRSDSRYLPDEHFAGRHAVLNAIQSHQPDLTPPADFDADRKNRCWDDKKVDAHHAIIPTARASAVKLNENEQ
QIYGLVARQYLMQFCPDAVFRKCTIDLDIAGGKFVAKARFLAEAGWRALLGGKERDEENDGMPLPVVAKDDELLCERGEV
LAKQTQPPRHFTDATLLSAMTGIARFVQDKELKKVLRATDGLGTEATRAGIIELLFRRSFLHKKGRYIHSTDAGKALIHS
LPDLAARPDMTAQWESTLTRISEKACRYDEFMQPLVQTLSGLIQQARQQPSGQAFRGLPSTGQKRPPRKAGRKTKETE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 3e-109 42
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 4e-106 41
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 4e-106 41
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-106 41
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 3e-105 41
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 6e-107 41