Gene Information

Name : PAGR_g1743 (PAGR_g1743)
Accession : YP_005992482.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase FliI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1907095 - 1908456 bp
Length : 1362 bp
Strand : -
Note : -

DNA sequence :
ATGACCACACGTTTGAACCGCTGGCTTGGCTCGCTTGATGCCTTTGAGAGTCGTATTTCTCAGGTACAACCGATTCGTCG
TTATGGGCGTTTGACCCGTGCCACCGGCCTGGTACTGGAGGCGACCGGCCTGCAGCTGCCCCTGGGTTCAACCTGTGTGA
TTGAGCGCAACGACGGTAAGAGCATCAGCGAAATCGAAAGTGAAGTCGTCGGTTTCAACGGTCAGAAACTGCTGATGATG
CCGCTGGAAGAAGTGGACGGCATTCTGCCGGGGGCGCGCGTTTATGCCCGGGCTACCGGTGAAAACCCGCAGGCCGGAAA
GCAGCTTTTACTCGGACCACAACTGCTGGGCCGTGTCCTTGACGGCAGCGGAAGGCCGCTCGATGGCTTACCGTCACCGG
AAACTGGCTACCGTGCGGCACTAAATACTCCGCCGTTTAACCCCTTACAGCGCACGCCCATCACTGATGTCCTGGATACG
GGCGTTCGGGCTATCAACGCCCTGCTCACCGTTGGCCGTGGTCAACGTATGGGCCTGTTTGCCGGTTCAGGCGTGGGTAA
AAGCGTGCTGCTCGGCATGATGGCGCGTTACACCCAGGCCGATGTGATCGTTGTCGGGTTAATCGGTGAGCGTGGTCGTG
AAGTTAAAGACTTTATTGAAAACATTTTAGGCGCGGAAGGCCGTGCCCGTTCCGTGGTGATTGCGGCGCCGGCCGATGTC
TCCCCGCTGTTGCGTCTTCAGGGCGCAGCCTATGCCACACGTATTGCAGAAGACTTCCGCGATCGCGGTAAGCACGTCCT
GTTAATCATGGACTCCCTGACGCGTTACGCCATGGCCCAGCGTGAGATTGCCCTGGCAATCGGTGAGCCACCGGCCACTA
AAGGTTATCCACCGTCTGTTTTCGCTAAGCTCCCGGCCCTGGTTGAGCGCGCCGGTAACGGTATCGATGGCGGCGGCTCC
ATTACGGCTTTTTATACCGTTCTGACCGAAGGCGACGACCAGCAGGATCCGATTGCAGACTCTGCCCGCGCAATCCTCGA
CGGACACATCGTGTTGTCACGTCGCCTCGCGGAGGCCGGACACTATCCGGCTATTGATATTGAAGCGTCAATCAGTCGTG
CCATGACATCACTGATTGATGAAAATCACTATGCACGCGTACGCCAGTTCAAGCAGTTGCTTTCAAGTTTTCAGCGCAAC
CGTGACCTGGTCAGCGTCGGCGCCTATGCCGCAGGCAGCGATCCCATGCTGGACAAAGCTATTCAGCTTTACCCGCAGAT
GGAAGCCTTCCTGCAACAAGGCATTTTTGAACGCAGTGAGTACGACGACGCCTGCCTGCATTTGCACGCCTTGTTTGGCT
AG

Protein sequence :
MTTRLNRWLGSLDAFESRISQVQPIRRYGRLTRATGLVLEATGLQLPLGSTCVIERNDGKSISEIESEVVGFNGQKLLMM
PLEEVDGILPGARVYARATGENPQAGKQLLLGPQLLGRVLDGSGRPLDGLPSPETGYRAALNTPPFNPLQRTPITDVLDT
GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADV
SPLLRLQGAAYATRIAEDFRDRGKHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGS
ITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTSLIDENHYARVRQFKQLLSSFQRN
RDLVSVGAYAAGSDPMLDKAIQLYPQMEAFLQQGIFERSEYDDACLHLHALFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 1e-75 48
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-73 48
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-73 48
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-75 48
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-76 47
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-76 47
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-76 47
lscN AAO18044.1 LscN Virulence TTSS locus Protein 6e-71 46
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-75 46
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 3e-75 46
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-69 46
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-69 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 9e-64 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-65 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-66 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-66 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-66 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-67 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-66 45
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-64 45
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-65 45
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 2e-73 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 6e-68 44
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-65 44
escN AAK26715.1 EscN Virulence LEE Protein 2e-65 44
escN AAL57542.1 EscN Virulence LEE Protein 2e-65 44
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-65 44
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-65 44
escN AAC31513.1 L0034 Virulence LEE Protein 2e-65 44
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-65 44
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-65 44
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-65 44
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-65 44
escN AAC38383.1 EscN Virulence LEE Protein 3e-65 44
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 5e-67 43
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 9e-67 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 4e-62 43
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 4e-62 43
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-71 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 4e-69 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-68 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-68 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG2331 Protein 7e-175 87
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG2499 Protein 8e-142 69
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG1254 Protein 2e-117 60
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG0048 Protein 3e-75 46
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG0192 Protein 1e-77 46
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG0390 Protein 7e-74 46
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG0515 Protein 7e-67 45
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG2144 Protein 7e-78 44
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG0812 Protein 1e-65 44
PAGR_g1743 YP_005992482.1 flagellum-specific ATP synthase FliI VFG0730 Protein 2e-65 44