Gene Information

Name : PAGR_g1736 (PAGR_g1736)
Accession : YP_005992475.1
Strain : Pantoea ananatis PA13
Genome accession: NC_017554
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1902194 - 1902928 bp
Length : 735 bp
Strand : -
Note : -

DNA sequence :
ATGATGCGTCGACTGCTCCCTCTTCTGCCGCTGCTGTTGCTGGCACCGGTTGCCCATGCCCAGTTGCCGGGCCTGGTTAG
TCAGCCATTAGCTAACGGTGGCCAAAGCTGGTCACTGCCGGTACAAACGCTGGTCTTTATTACTTCGTTAACATTCCTGC
CAGCCATTCTGTTAATGATGACCAGCTTTACCCGCATCATTATTGTTTTCGGCCTGCTACGTAATGCGCTGGGCACGCCT
TCCGCGCCGCCTAACCAGGTATTACTTGGCCTGACCTTATTTTTAACGTTTTTTATTATGGCACCGACCTTCGATAAAAT
TTATCAGGATGCCTACCTGCCATTTAGCCAGGATAAAATCAGCATGGATGTGGCGATCGATAAAGGCGCACAGCCGCTGC
GGGAGTTTATGCTGCGGCAAACCCGTGAGGCTGACTTAGCGTTATTTGCCCGCCTGGCAAATACAGCGCCGATTGCGGGT
CCGGAAGCCGTACCTATGCGTATTCTGTTGCCGGCTTACGTGACCAGTGAATTAAAAACCGCATTCCAGATTGGCTTTAC
CGTATTTATTCCTTTTTTAATTATCGACCTGGTGGTTGCCAGCGTGTTAATGGCACTCGGGATGATGATGGTTCCCCCGG
CAACAATTGCGCTGCCGTTCAAATTAATGTTGTTTGTTCTGGTGGACGGCTGGCAATTGCTGGTTGGCTCGCTGGCGCAA
AGTTTCTATTCCTGA

Protein sequence :
MMRRLLPLLPLLLLAPVAHAQLPGLVSQPLANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTP
SAPPNQVLLGLTLFLTFFIMAPTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFMLRQTREADLALFARLANTAPIAG
PEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQ
SFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-23 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-23 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-23 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-24 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-26 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-28 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-27 41
escR AAK26700.1 EscR Virulence LEE Protein 3e-27 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-27 41
escR AAL57527.1 EscR Virulence LEE Protein 3e-27 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-27 41
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-27 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-26 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-27 41
escR AAC31528.1 L0049 Virulence LEE Protein 3e-27 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-27 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-27 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_g1736 YP_005992475.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-88 89
PAGR_g1736 YP_005992475.1 flagellar biosynthetic protein FliP VFG2494 Protein 5e-68 67
PAGR_g1736 YP_005992475.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-57 61
PAGR_g1736 YP_005992475.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-54 55
PAGR_g1736 YP_005992475.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-28 41
PAGR_g1736 YP_005992475.1 flagellar biosynthetic protein FliP VFG0827 Protein 2e-27 41