Gene Information

Name : PAGR_p016 (PAGR_p016)
Accession : YP_005990535.1
Strain :
Genome accession: NC_017553
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 16189 - 17019 bp
Length : 831 bp
Strand : +
Note : -

DNA sequence : 
ATGATGTGGCTGGAACCTTTTCAGTTTGGTTTTATGAATCATGCTTTACTCATCGCGGCGGTGGTTGCCGTGCCTTGTGC
GCTGCTGTCAGTCTTTTTGGTCCTGAAGGGCTGGGCGTTGATGGGTGATGCGATGAGCCATGCTGTCTTTCCAGGCATAG
TGCTGGCGTGGATGATGGCATTACCTCTGGCAGTGGGCGCATTCAGTGCCGGTTTGTTTTGTGCTGTCGCCAGTGGCTAC
CTTAAAGAGAACAGCAGAATCAAGCAGGACACGGTTCTGGGTATTGTTTTTTCCGGGATGTTTGCGGTTGGCCTGATTTT
GTACATCGCCCTGAAACCGGAGATCCACCTCGACCATATTTTATTCGGCGATATGCTGGGGATCAGCCAAAGCGATATTT
TTCAGACGTTAGGCATTGCCGCTGTGATTGTCGCTGTCGTCGGCCTGAAATGGCGCGATTTCATGCTGTTCAGCTTTGAT
CCTCAACAGGCTCAGGTGTGCGGGCTTTCGGTGCGTTGGCTGCATTATAGCCTGTTGTGTATGGTGTCTCTGACCATTGT
GGCAACGCTTAAGGCAGTAGGGATTATTTTATCGATTTCATTGCTTATTGCACCCGGAGCGATTGCCGTTTTGCTGACGG
ATCGGTTTTCCCATGCGTTGATACTGGCGACGTTTGTTTCGCTGGTCGTCTCACTCTGCGGGGTTTATCTCTCATTTTTT
ATTGACAGTGCTCCCGCACCAACCATTGTGGTGCTTTTCGCTCTGGTCTTTATCGTCAGCTTTATCACCACTCACTATAA
ACTTTCTCGCCTGTCTAAATCCTCCTGCTGA

Protein sequence : 
MMWLEPFQFGFMNHALLIAAVVAVPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAWMMALPLAVGAFSAGLFCAVASGY
LKENSRIKQDTVLGIVFSGMFAVGLILYIALKPEIHLDHILFGDMLGISQSDIFQTLGIAAVIVAVVGLKWRDFMLFSFD
PQQAQVCGLSVRWLHYSLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTDRFSHALILATFVSLVVSLCGVYLSFF
IDSAPAPTIVVLFALVFIVSFITTHYKLSRLSKSSC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-85 70
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-85 70
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-85 70
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-86 70
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-86 70
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-41 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-41 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-41 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-41 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-41 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_p016 YP_005990535.1 chelated iron transport system membrane protein YfeD BAC0352 Protein 3e-86 70
PAGR_p016 YP_005990535.1 chelated iron transport system membrane protein YfeD BAC0442 Protein 2e-65 57
PAGR_p016 YP_005990535.1 chelated iron transport system membrane protein YfeD BAC0351 Protein 2e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAGR_p016 YP_005990535.1 chelated iron transport system membrane protein YfeD VFG0528 Protein 3e-86 70
PAGR_p016 YP_005990535.1 chelated iron transport system membrane protein YfeD VFG0527 Protein 1e-41 41