Gene Information

Name : lolD (NCGM2_4101)
Accession : YP_005982322.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Resistance
Product : putative lipoprotein releasing system ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4423442 - 4424125 bp
Length : 684 bp
Strand : -
Note : similar to GI:116050989; similar to PA14_25440 of P. aeruginosa UCBPP-PA14

DNA sequence : 
ATGAATGACAAGTCGGTGCTGAGTTGCCGCAACCTGAGCAAGAGCTACGACGAGGGGCCGCAATCGGTGCAGGTGCTGTC
CGGCGTCGAGTTGAACCTGCTGCCTGGGGAGCGGGTGGCTATCGTCGGCAGCTCCGGTTCGGGCAAGAGCACCTTGCTGA
ACATGCTCGGCGGCCTGGACACGCCCTCCGCCGGCAGCGTCTGGCTCGCCGGCGAGGAACTCTCGGCGCTGAACGAGACG
GCCCGCGGGCTGCTGCGCAACCGCGCGCTGGGCTTCGTCTACCAGTTCCACCACCTGTTGCCGGAGTTCACCGCCCTGGA
GAACGTCTGCATGCCGCTGTTGATCGGCCGCACGCCGATCGCGGAAGCCCGCCAGCGGGCGGCCGAGCTGCTGGAGCGGG
TCGGGCTGGGGCATCGCCTGTCGCACAAGCCGGCCGAGCTGTCCGGCGGCGAGCGCCAGCGGGTGGCGATCGCCCGCGCG
CTGGTCAACCGTCCGCAGCTGGTACTGCTCGACGAGCCCACCGGCAACCTCGACCAGCATACCGCCCAGGGTATCCAGGA
GCTGATGCTGGAACTGAGCCGTTCGTTGCAGACCTCGTTCCTGGTGGTAACCCACGATCTCCAGCTGGCCGGGCACATGG
ATCGCATCCTGCGCCTGGAAGAAGGCCGACTGATCGCCGCGTAG

Protein sequence : 
MNDKSVLSCRNLSKSYDEGPQSVQVLSGVELNLLPGERVAIVGSSGSGKSTLLNMLGGLDTPSAGSVWLAGEELSALNET
ARGLLRNRALGFVYQFHHLLPEFTALENVCMPLLIGRTPIAEARQRAAELLERVGLGHRLSHKPAELSGGERQRVAIARA
LVNRPQLVLLDEPTGNLDQHTAQGIQELMLELSRSLQTSFLVVTHDLQLAGHMDRILRLEEGRLIAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-27 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_005982322.1 putative lipoprotein releasing system ATP-binding protein NC_012469.1.7686878. Protein 4e-35 44
lolD YP_005982322.1 putative lipoprotein releasing system ATP-binding protein NC_008702.1.4606598. Protein 5e-31 44