Gene Information

Name : pscL (NCGM2_2624)
Accession : YP_005980867.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2797496 - 2798140 bp
Length : 645 bp
Strand : +
Note : similar to GI:116049675; similar to PA14_42250 of P. aeruginosa UCBPP-PA14

DNA sequence : 
ATGCTTCCATTTGTTGAACTAGACGCCAGTCGCGTACGGCTGGCCCCCGGGCAGGCCCTGTTGCGCGCCCGCGACTACCA
GGACTACCTCAGCGCCAACCGCCTGGTGGAAGCGGCACGCGAGCGTGCCGCCGAAATCGAGCGCGAGGCCCACGAGGTTT
ACCAGGAGCAGAAGCGCCTGGGCTGGGAGGCCGGATTGGAGGAGGCGCGTCTGCGCCAGGCCGGGCTGATCCAGGAAACG
CTACTGCGCTGCAATCGCTACTACCGGCAGGTCGATCGCCAGCTTGGCGAGGTGGTGCTGCAGGCGGTGCGCAAGGTGTT
GCGCCACTACGACGCTGTCGAGCTGACCCTGGCGGCCACGCGCGAGGCACTGGCATTGGTGAGCAACCAGAAGCAGGTGA
TCCTGCACGTCCAGCCGGAACAGCTGGTCGCGGTGCGCGAGCAGGTCGCCCGGGTGCTTAAGGATTTCCCCGAGGTGGGC
TACCTGGAAGTGGTCGGCGATGCCCGGCTGGACCAGGGCGGTTGCATCCTGGAAACCGAGATCGGGATCATCGACGCATC
GCTCGACAGCCAGTTGGCGGCGTTGCAGGCCGCATTGACGGAGGGCGTGGCGCGGAGCGGCGAGGAGGAAGGGGACGCCG
GTTGA

Protein sequence : 
MLPFVELDASRVRLAPGQALLRARDYQDYLSANRLVEAARERAAEIEREAHEVYQEQKRLGWEAGLEEARLRQAGLIQET
LLRCNRYYRQVDRQLGEVVLQAVRKVLRHYDAVELTLAATREALALVSNQKQVILHVQPEQLVAVREQVARVLKDFPEVG
YLEVVGDARLDQGGCILETEIGIIDASLDSQLAALQAALTEGVARSGEEEGDAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18079.1 LscL Not tested TTSS locus Protein 8e-45 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pscL YP_005980867.1 type III secretion system protein VFG0220 Protein 1e-70 99
pscL YP_005980867.1 type III secretion system protein VFG0411 Protein 1e-43 59
pscL YP_005980867.1 type III secretion system protein VFG0049 Protein 1e-16 42