Gene Information

Name : pscF (NCGM2_2618)
Accession : YP_005980861.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Virulence
Product : type III export protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2794772 - 2795029 bp
Length : 258 bp
Strand : +
Note : similar to GI:116049669; similar to PA14_42310 of P. aeruginosa UCBPP-PA14

DNA sequence : 
ATGGCGCAGATATTCAACCCCAACCCGGGGAATACCCTCGATACCGTGGCCAATGCCCTGAAGGAGCAGGCCAACGCAGC
GAACAAGGACGTCAACGACGCGATCAAGGCCTTGCAGGGGACCGACAATGCCGACAACCCGGCGCTGCTGGCCGAGCTGC
AACACAAGATCAACAAGTGGTCGGTCATCTACAACATCAACTCGACGGTGACCCGGGCGCTGCGCGACCTGATGCAAGGC
ATCCTGCAGAAGATCTGA

Protein sequence : 
MAQIFNPNPGNTLDTVANALKEQANAANKDVNDAIKALQGTDNADNPALLAELQHKINKWSVIYNINSTVTRALRDLMQG
ILQKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 3e-23 74

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pscF YP_005980861.1 type III export protein VFG0214 Protein 2e-33 100
pscF YP_005980861.1 type III export protein VFG0405 Protein 2e-19 69