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Name : pscD (NCGM2_2617) Accession : YP_005980860.1 Strain : Pseudomonas aeruginosa NCGM2.S1 Genome accession: NC_017549 Putative virulence/resistance : Virulence Product : type III export protein Function : - COG functional category : - COG ID : - EC number : - Position : 2793305 - 2794603 bp Length : 1299 bp Strand : + Note : similar to GI:116049667; similar to PA14_42340 of P. aeruginosa UCBPP-PA14 DNA sequence : ATGGCCTGGAAGATCCGCTTCTACAGCGGGCTGAACCAGGGCGCCGAAGTCTCGCTCGGAGAGGGCCGGGTGGCGCTTGG CAGCGATCCGTTGCAGGCCGACCTGGTGTTGCTCGACGAGGGCATCGCGGCAGTCCACCTGGTGCTCGAGGTCGATGCCC AGGGCGTGCGCCTGCTGGAGTGGGCGGAGGGCTGCGAGCCTCGCCAGGACGGCCAGGCGCAAGTCGCCGGAGCGATCCTG CAGGCGCTTGCCGGGCAGACCTGCGGCCCGCTGCGCTGGGCATTCTGCGACCCGCAGCGGAGTTTTCCCGAGCGTTTCCC CGAAGCCGAGGTGCAGACCGCGCCAGTGCGCCGCAAGTCGTCCGCCCGTGCCGGCGGGGTCTGGCTGCTCGGCGTCAGCC TGGCGCTGGCGCTGTGTCTGCTGGGCATGCTCGTCGAACCCTGGTCGGCCCGCCAGCACGGCATGGCCGACGAGGAGCCC CTGGCGAAGGTGCGCGCCTACCTGCGCGAGCAGGGCATGAGCGAGGTGGATGTGCAGCGCCAGGGCGACAGTCTCCTGCT CGGCGGCTACCTGGAGGACAACGCACGGCGCCTGGCGCTGCAGCGCTACCTCGATGGCAGCGGCGTGGACTACCGACTGG AAGCACGGAGCATGGAAGACATTCGCCAGGGCGTGGATTTCATCCTGCAGAAATTCGGCTATCGGCAGATCCTCAGCAGC AACGCGGACAAGCCTGGCTGGGTCCGGCTCAACGGCGAACTGGCGGAACAGGACGAACGCTGGGCGCGGATCGACGCATT GCTGGAGTCCGAGGTGCCGGGCCTGCTCGGGGTGGAAAACCAGGTCCGGGTGGCCGGCTCACACCTGCGCCGCCTCGAGC GCCTGCTGGCGGACGCCGGCCTCGACCGGCAACTGAGTTTCCGCGAGCGCGGCGAGCGCATCGAGCTGAGCGGTACGCTC GACGAGGTCCAGCTCAACGCCTTCTACCGCCTGCAGCGCGAGTTCCAGCAGGAGTTCGGCAACCGCCCGAGCCTGGAGCT GCTCAGTCGCGGCAAGCGCGCCAGCGGCGACGAACTGGAGTTCACGGTGCGCTCGGTGTCGCTGGGGCGGGTGCCCTATG TAGTGCTCGGCGACGGCCAGAAATACCCGGTGGGCGCCTCGACATCCCGCGGTGTGCGAATCCTCGCCATCGAGCCGGAG TCGATCCTGGTGGCCCGCGGCAAGCAGCGTTTCATCATCAATCTCAAAGGGGAGGTGCTCCATGATGACAGCCTTGGAAA CGCGACTGTCGGTCGCTGA Protein sequence : MAWKIRFYSGLNQGAEVSLGEGRVALGSDPLQADLVLLDEGIAAVHLVLEVDAQGVRLLEWAEGCEPRQDGQAQVAGAIL QALAGQTCGPLRWAFCDPQRSFPERFPEAEVQTAPVRRKSSARAGGVWLLGVSLALALCLLGMLVEPWSARQHGMADEEP LAKVRAYLREQGMSEVDVQRQGDSLLLGGYLEDNARRLALQRYLDGSGVDYRLEARSMEDIRQGVDFILQKFGYRQILSS NADKPGWVRLNGELAEQDERWARIDALLESEVPGLLGVENQVRVAGSHLRRLERLLADAGLDRQLSFRERGERIELSGTL DEVQLNAFYRLQREFQQEFGNRPSLELLSRGKRASGDELEFTVRSVSLGRVPYVVLGDGQKYPVGASTSRGVRILAIEPE SILVARGKQRFIINLKGEVLHDDSLGNATVGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscD | AAO18032.1 | LscD | Virulence | TTSS locus | Protein | 1e-101 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pscD | YP_005980860.1 | type III export protein | VFG0212 | Protein | 0.0 | 99 |
| pscD | YP_005980860.1 | type III export protein | VFG0403 | Protein | 2e-76 | 43 |
