Gene Information

Name : popD (NCGM2_2608)
Accession : YP_005980851.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Virulence
Product : translocator outer membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2786857 - 2787744 bp
Length : 888 bp
Strand : +
Note : similar to GI:116049659; similar to PA14_42440 of P. aeruginosa UCBPP-PA14

DNA sequence : 
ATGATCGATACGCAATATTCCCTGGCGGCTACCCAGGCCGCGATCCCCTCCGAGCCGATCGCTCCCGGCGCCGCCGGGCG
TTCCGTCGGCACGCCGCAAGCGGCTGCGGAACTGGCGCAGGCGCCGGCCACGCGGGCCGACCGGGTCGAGCTGAACGCTC
CGCGCCAGGCGCTCGACCCGGTGCGCATGGAAGCGGCCGGCAGCGAGCTGGACAGCAGCGTCGAGCTTCTGCTGATTCTC
TTCCGCATCGCGCAGAAGGCGCGCGAGCTGGGCGTGCTCCAGCGCGACAACGAGAACCAGGCGATCATCCATGCGCAGAA
GGCGCAGGTGGACGAGATGCGCAGCGGCGCCACGCTGATGATCGCCATGGCGGTGATCGCCGGCGTCGGCGCGTTGGCCT
CGGCAGTGGTCGGCAGTCTCGGCGCGTTGAAGAACGGCAAGGCCATCAGCCAGGAGAAGACCCTGCAGAAGAACATCGAT
GGGCGCAACGAACTGATCGACGCGAAGATGCAGGCGCTGGGCAAGACCTCCGATGAGGATCGCAAGATCGTCGGCAAGGT
CTGGGCGGCGGACCAGGCGCAGGACAGTGTGGCGTTGCGCGCGGCGGGCCGTGCCTTCGAGAGCCGCAACGGCGCCCTGC
AGGTGGCCAACACGGTGATCCAGTCCTTCGTCCAGATGGCCAACGCCTCGGTCCAGGTGCGCCAGGGCGAGTCGCAGGCG
AGCGCCCGGGAAGAGGAGGTCAACGCCACCATCGGGCAGAGCCAGAAGCAGAAGGTCGAGGACCAGATGAGCTTCGATAC
CGGCTTCATGAAGGACGTCCTGCAGCTCATCCAGCAGTACACCCAGAGCCATAACCAGGCCTGGCGTGCGGCGGCCGGAG
TGGTCTGA

Protein sequence : 
MIDTQYSLAATQAAIPSEPIAPGAAGRSVGTPQAAAELAQAPATRADRVELNAPRQALDPVRMEAAGSELDSSVELLLIL
FRIAQKARELGVLQRDNENQAIIHAQKAQVDEMRSGATLMIAMAVIAGVGALASAVVGSLGALKNGKAISQEKTLQKNID
GRNELIDAKMQALGKTSDEDRKIVGKVWAADQAQDSVALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQA
SAREEEVNATIGQSQKQKVEDQMSFDTGFMKDVLQLIQQYTQSHNQAWRAAAGVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopD AAO18056.1 LopD Virulence TTSS locus Protein 1e-57 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
popD YP_005980851.1 translocator outer membrane protein VFG0204 Protein 2e-114 97
popD YP_005980851.1 translocator outer membrane protein VFG0378 Protein 3e-38 44