Gene Information

Name : popN (NCGM2_2597)
Accession : YP_005980840.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Virulence
Product : Type III secretion outer membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2779232 - 2780098 bp
Length : 867 bp
Strand : +
Note : similar to GI:116049648; similar to PA14_42550 of P. aeruginosa UCBPP-PA14

DNA sequence : 
ATGGACATCCTCCAGAGTTCCTCCGCCGCGCCCCTCGCGCCGCGGGAAGCGGCCAACGCCCCCGCACAGCAGGCCGGCGG
CAGCTTCCAGGGCGAGCGCGTCCACTACGTTTCCGTTTCGCAGTCGCTGGCCGATGCCGCGGAAGAGCTGACCTTCGCCT
TTTCCGAGCGCGCCGAGAAATCCCTGGCCAAGCGCCGCCTGAGCGACGCCCATGCGCGCCTGAGCGAAGTCCAGGCCATG
CTGCAGGAGTACTGGAAGCGCATTCCGGACCTGGAAAGCCAGCAGAAGCTCGAGGCGCTGATCGCCCACCTGGGCAGCGG
TCAACTGAGCAGCCTGGCGCAGCTCAGCGCTTACCTGGAGGGCTTCTCCAGCGAGATCAGCCAGCGCTTCCTGGCGCTGT
CGCGGGCGCGCGACGTCCTGGCCGGGCGGCCGGAGGCGCGGGCGATGCTGGCGCTGGTCGACCAGGCGTTGCTGCGGATG
GCCGACGAGCAGGGCCTGGAGATCGAACTCGGCCTGCGCATCGAGCCGCTGGCCGCCGAGGCTTCCGCCGCCGGTGTCGG
CGATATCCAGGCGCTGCGCGATACCTACCGTGACGCGGTACTCGACTACCGGGGCCTGTCGGCGGCCTGGCAGGACATCC
AGGCGCGCTTCGCCGCGACGCCGCTGGAGCGGGTCGTGGCCTTCCTGCAGAAAGCCCTGAGCGCCGACCTGGACAGTCAG
TCGAGCCGGCTCGATCCGGTGAAGCTGGAGCGGGTCATGAGCGACATGCACAAGCTGCGCGTGCTCGGCGGCCTGGCGGA
GCAGGTGGGGGCGCTCTGGCAGGTGCTGGTGACAGGGGAGCGGGGCCATGGCATACGGGCCTTCTGA

Protein sequence : 
MDILQSSSAAPLAPREAANAPAQQAGGSFQGERVHYVSVSQSLADAAEELTFAFSERAEKSLAKRRLSDAHARLSEVQAM
LQEYWKRIPDLESQQKLEALIAHLGSGQLSSLAQLSAYLEGFSSEISQRFLALSRARDVLAGRPEARAMLALVDQALLRM
ADEQGLEIELGLRIEPLAAEASAAGVGDIQALRDTYRDAVLDYRGLSAAWQDIQARFAATPLERVVAFLQKALSADLDSQ
SSRLDPVKLERVMSDMHKLRVLGGLAEQVGALWQVLVTGERGHGIRAF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopN AAO18045.1 LopN Virulence TTSS locus Protein 5e-74 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
popN YP_005980840.1 Type III secretion outer membrane protein VFG0193 Protein 2e-111 100
popN YP_005980840.1 Type III secretion outer membrane protein VFG0389 Protein 8e-50 49