Gene Information

Name : popB (PAM18_3338)
Accession : YP_005975923.1
Strain : Pseudomonas aeruginosa M18
Genome accession: NC_017548
Putative virulence/resistance : Virulence
Product : translocator protein PopB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3725062 - 3726234 bp
Length : 1173 bp
Strand : -
Note : -

DNA sequence : 
ATGAATCCGATAACGCTTGAACGCGCCGGACTGCCCTACGGGGTGGCCGACGCCGGGGATATCCCGGCGCTCGGCAGGCC
GGTCGCGAGGGATGTCGAGAGTCTGCGGGTGGAGCGCCTGGCGGCGCCGGCTGCGGCTTCCGCGAGCGGCACGGGGGTGG
CGCTGACGCCGCCGTCCGCAGCCAGCCAGCAGCGCCTGGAGGTCGCCAATCGTGCGGAGATCGCCAGCCTGGTGCAAGCA
GTGGGCGAGGATGTCGGACTGGCGCGGCAGGTTGTGCTGGCCGGCGCTTCGACGCTGTTGTCCGCCGGCCTGATGTCGCC
GCAGGCGTTCGAGATCGAGCTGGCGAAAATCACCGGCGAAGTCGAGAACCAGCAGAAGAAACTCAAGCTGACCGAAATCG
AGCAGGCGCGAAAGCAGAACCTGCAGAAGATGGAGGACAACCAGCAGAAGATCAGGGAATCGGAAGAAGCCGCGAAAGAA
GCCCAGAAGTCCGGTCTGGCAGCCAAAATCTTTGGTTGGATCAGTGCAATAGCTTCGATCATCGTCGGCGCAATCATGGT
GGCAACCGGCGTCGGCGCGGCCGCGGGTGCACTGATGATCGCGGGCGGTGTCATGGGAGTGGTCTCCCAGTCGGTACAGC
AGGCAGCCGCGGACGGATTGATCAGCAAGGAAGTGATGGAAAAGCTCGGCCCGGCACTGATGGGTATCGAGATCGCCGTC
GCGCTGCTGGCGGCGGTGGTCAGCTTCGGCGGCTCAGCGGTCGGCGGGCTGGCCAGACTGGGAGCGAAGATCGGCGGCAA
GGCGGCCGAGATGACCGCCAGCCTGGCGAGCAAGGTCGCCGACCTGGGCGGCAAGTTCGGCAGTTTGGCCGGCCAATCGC
TGTCGCACTCGCTGAAACTCGGCGTGCAGGTTTCCGACCTGACCCTGGACGTCGCCAACGGCGCGGCCCAGGCCACTCAT
TCGGGATTCCAGGCGAAGGCCGCGAACCGCCAGGCCGACGTGCAGGAATCGCGTGCCGACCTGACCACCCTGCAGGGCGT
GATCGAGCGCCTGAAGGAAGAGCTGAGCCGCATGCTGGAAGCATTCCAGGAAATCATGGAGCGGATCTTCGCCATGCTCC
AGGCCAAGGGTGAAACCCTGCACAACCTGTCCAGCCGACCGGCAGCGATCTGA

Protein sequence : 
MNPITLERAGLPYGVADAGDIPALGRPVARDVESLRVERLAAPAAASASGTGVALTPPSAASQQRLEVANRAEIASLVQA
VGEDVGLARQVVLAGASTLLSAGLMSPQAFEIELAKITGEVENQQKKLKLTEIEQARKQNLQKMEDNQQKIRESEEAAKE
AQKSGLAAKIFGWISAIASIIVGAIMVATGVGAAAGALMIAGGVMGVVSQSVQQAAADGLISKEVMEKLGPALMGIEIAV
ALLAAVVSFGGSAVGGLARLGAKIGGKAAEMTASLASKVADLGGKFGSLAGQSLSHSLKLGVQVSDLTLDVANGAAQATH
SGFQAKAANRQADVQESRADLTTLQGVIERLKEELSRMLEAFQEIMERIFAMLQAKGETLHNLSSRPAAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopB AAO18055.1 LopB Virulence TTSS locus Protein 7e-46 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
popB YP_005975923.1 translocator protein PopB VFG0203 Protein 4e-117 99
popB YP_005975923.1 translocator protein PopB VFG0379 Protein 4e-34 46