Gene Information

Name : pscJ (PAM18_3323)
Accession : YP_005975908.1
Strain : Pseudomonas aeruginosa M18
Genome accession: NC_017548
Putative virulence/resistance : Virulence
Product : type III export protein PscJ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3715019 - 3715753 bp
Length : 735 bp
Strand : -
Note : -

DNA sequence :
GTGAAAGGTCTGTCGCGCATGGCGCTCCTGGCGCTGGTCCTGGCGTTGGGCGGGTGCAAGGTCGAACTCTATACCGGGAT
CAGCCAGAAGGAAGGTAACGAGATGCTGGCGCTGTTGCGTTCGGAGGGCGTTTCCGCGGACAAGCAGGCGGACAAGGATG
GCACCGTGCGCCTGCTGGTGGAGGAATCGGATATCGCCGAGGCGGTGGAGGTGCTCAAGCGCAAGGGCTATCCGCGGGAG
AACTTCTCCACGCTGAAGGATGTGTTTCCCAAGGACGGGCTGATTTCCTCGCCCATCGAAGAGCGCGCGCGGCTCAACTA
CGCCAAGGCCCAGGAGATTTCCCATACCCTTTCCGAGATCGATGGCGTGCTGGTGGCGCGGGTCCATGTGGTGCTGCCAG
AGGAGCGCGACGGACTGGGCAGGAAGTCCTCGCCGGCATCGGCCTCGGTGTTCATCAAGCACGCCGCCGACGTGCAACTG
GATGCCTACGTGCCGCAGATCAAGCAACTGGTGAACAACGGCATCGAAGGACTCAGCTACGACCGCATCAGCGTGGTCCT
GGTGCCGTCGGCCGGGGTCCGCCAGGTCCCGCTGGCGCCACGCTTCGAGAGTGTCTTCTCGATCCAGGTGGCGGAGCACT
CGCGCGGACGCCTGCTCGGTCTGTTCGGCCTGCTGCTGGCGTTGCTGCTGGCGAGCAACCTGGCGCAGTTCTTCTGGCAC
CGGCAACGGGGCTGA

Protein sequence :
MKGLSRMALLALVLALGGCKVELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE
NFSTLKDVFPKDGLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGLGRKSSPASASVFIKHAADVQL
DAYVPQIKQLVNNGIEGLSYDRISVVLVPSAGVRQVPLAPRFESVFSIQVAEHSRGRLLGLFGLLLALLLASNLAQFFWH
RQRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 2e-79 82
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 3e-29 43
hrcJ AAC35801.1 putative hrp type III secretion pathway protein Virulence Hrp PAI Protein 4e-28 42
hrcJ AAB49174.1 HrcJ Virulence Hrp PAI Protein 4e-27 42
XC_3009 YP_244077.1 HrcJ protein Virulence Hrp PAI Protein 2e-35 42
hrcJ NP_636607.1 HrcJ protein Virulence Hrp PAI Protein 2e-35 42
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 2e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pscJ YP_005975908.1 type III export protein PscJ VFG0218 Protein 1e-91 99
pscJ YP_005975908.1 type III export protein PscJ VFG0409 Protein 1e-71 77
pscJ YP_005975908.1 type III export protein PscJ VFG0051 Protein 6e-36 46