Gene Information

Name : LMLG_3018 (LMLG_3018)
Accession : YP_005972248.1
Strain : Listeria monocytogenes Finland 1988
Genome accession: NC_017547
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator PhoP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2515006 - 2515728 bp
Length : 723 bp
Strand : -
Note : -

DNA sequence :
ATGGGAAGTACGTTGGTAAAAATTCTTGTAGTTGATGATGAAGCTTCTATTGTTACCTTGCTACAATTTAATATTGAAAA
AGCAGGATTTGAAGTGGTGACAGCTGAAGATGGTAGAACTGGGTATGAGCTCGCTTTGTCCGAAAAGCCAGATTTAATTG
TGCTTGATTTAATGCTTCCTGAGATGGACGGAATCGAAGTAACAAAAAAACTTCGTCAAGATAAAGTAAATGTACCAATT
TTAATGTTAACAGCAAAAGATGAAGAGTTAGATAAAATTATTGGACTTGAACTTGGAGCAGATGATTATATGACTAAGCC
TTTTAGTCCAAGAGAAGTAGTGGCGAGAATTAAAGCTATCCTGCGTCGAACAGAAGGAAAAGCAGAAATAATAGAAGAAT
TAACCGAAGATGTGGAAGCCGCTATATTAATTGGTGATTTGAAAATTTTGCCAGATAGTTACGAAGTGTATTTACAAGAT
GATTTACTTGACCTAACACCGAAAGAATTTGAGTTATTATTATTCCTGGCGAATCATCGTGGCAAAGTTTTCTCTAGAGA
CCAATTGCTCGATACTGTCTGGAACTATGATTACGTTGGCGAAACCCGAATTGTAGACGTTCATGTTAGCCATTTGCGCG
ATAAAATCGAACTAGATACGAAACAACCTAAATATATCAAAACAATTCGTGGCTTCGGTTATAAAATGGAGAACGTAAAA
TAA

Protein sequence :
MGSTLVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVTKKLRQDKVNVPI
LMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKAEIIEELTEDVEAAILIGDLKILPDSYEVYLQD
DLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKMENVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-41 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP HE999704.1.gene2815. Protein 5e-109 99
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_003923.1003749.p0 Protein 2e-68 61
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_002952.2859905.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_009782.5559369.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_002951.3237708.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_002758.1121668.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_009641.5332272.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_013450.8614421.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_007793.3914279.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_007622.3794472.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_002745.1124361.p0 Protein 3e-68 60
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP AE016830.1.gene1681. Protein 2e-69 58
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_012469.1.7685629. Protein 5e-55 55
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP NC_012469.1.7686381. Protein 4e-60 50
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP CP001485.1.gene721.p Protein 6e-36 43
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP AF162694.1.orf4.gene Protein 3e-37 43
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP AE000516.2.gene3505. Protein 6e-38 43
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP EU250284.1.orf4.gene Protein 7e-39 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP CP004022.1.gene3215. Protein 1e-35 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP BAC0533 Protein 1e-31 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP CP000647.1.gene4257. Protein 1e-31 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP AM180355.1.gene1830. Protein 6e-38 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP CP004022.1.gene1676. Protein 1e-32 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP CP001918.1.gene3444. Protein 3e-34 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP CP000034.1.gene3671. Protein 5e-39 41
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP CP001918.1.gene5135. Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP VFG1702 Protein 4e-42 42
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP VFG1563 Protein 6e-42 42
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP VFG1386 Protein 5e-39 42
LMLG_3018 YP_005972248.1 DNA-binding response regulator PhoP VFG1389 Protein 7e-33 41