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Name : clpC (PPM_4484) Accession : YP_008050046.1 Strain : Paenibacillus polymyxa M1 Genome accession: NC_017542 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit clpC Function : - COG functional category : - COG ID : - EC number : - Position : 5188764 - 5191208 bp Length : 2445 bp Strand : - Note : - DNA sequence : ATGATGTTTGGAAGATTTACGGAACGTGCACAGAAAGTGCTTGCCTTGGCCCAAGAAGAAGCTGTTCGATTGGGACACAA CAACATTGGCACAGAGCACATTTTGCTAGGACTCATTCGTGAAGGCGAAGGAATAGCAGCGAAAGCCTTAATCGGTTTAG GGCTGGGACTGGAAAAAATCCAGGATGAAGTGGAAACACTGATTGGACGCGGTCAAGAGCAACCAACGAACATTGCCTAT ACTCCACGTGCCAAAAAAGTCATTGAGCTGTCTATGGACGAAGCGCGTAAATTGGGTCATACCTATGTAGGTACCGAGCA TATTTTGCTAGGTCTCATTCGTGAAGGTGAAGGCGTAGCAGCACGTGTACTGAACAACCTGGGTATCAGTTTGAACAAAG CGCGTCAGCAAGTGCTTCAATTGCTCGGCAGCAGCGAGGCAGTTTCCAGCCATCACGGTGCTCCAGCTAATGTCAGCACG CCAACCCTGGACAGTCTGGCACGCGATCTGACAGCTTCTGCGAAGGAAAATAACTTGGACCCCGTTATTGGGCGCAGCAA GGAAATTGAGCGCGTTATTCAAGTGCTCAGCCGCCGTACAAAGAACAATCCTGTTTTGATCGGTGAACCTGGGGTAGGTA AAACAGCGATTGCCGAAGGATTGGCACAAAAAATCATAGCGAATGAGATTCCTGAAACCTTGCGCGACAAACGCGTAATG ACACTCGATATGGGCTCTGTCGTAGCAGGTACTAAGTATCGTGGTGAATTTGAGGATCGCTTGAAGAAGATTATGGACGA GATTCGTCAAGCCGGAAATATCGTACTGTTCATTGATGAGCTGCATACGCTGATTGGTGCTGGTGGAGCGGAAGGCGCAA TTGATGCGTCCAACATCCTGAAACCTGCTCTGGCACGTGGCGAGCTGCAATGTATCGGTGCTACTACGCTGGATGAATAT CGCAAATATATTGAGAAAGATGCTGCTTTGGAGCGTCGTTTCCAACCTATTACAGTGGATCAACCTTCTCCAGAAGAAGC AATCCAAATCTTGTATGGTCTGCGTGACCGTTACGAAGCGCATCACCGTGTGAAGATCACGGATGAGGCTATTGAAGCTG CAGTAAGATTGTCAGATCGTTATATTACTGATCGCTTCCTACCGGATAAGGCTATTGACCTTATTGATGAAGCAGGCTCC AAGGTAAGGCTGAATTCCTATACAGTACCGCCAAACCTAAAACAGCTGGAAAACCGTCTGGAAGATATCCGCAAGGAAAA AGATTCAGCGGTACAAAGTCAGGAGTTTGAAAAGGCAGCTGCGCTGCGAGATACAGAGCAAAAGATTCGTGAAGAGCTGG ATGTCACTAAAAACCAATGGAAAGAACAACAGGGGCGTACAGATTCCGAAGTTACACCAGAGGATATCGCTCAGGTTGTT GCCATCTGGACTGGTGTCCCAGTCAGCAAGCTAAAAGAAGAAGAAACACATCGTTTGCTGAATATGGAGCAACTGTTACA TGAACGGGTGATTGGGCAGGAGGAAGCTGTTAAGGCAGTAAGCCGGGCGATTCGCCGGGCACGCGCCGGTCTGAAAGATC CGAAGCGTCCAATCGGCTCCTTTATTTTCCTCGGTCCAACTGGGGTTGGTAAAACAGAGCTGGCACGCGCCTTGGCTGAA TCTATGTTTGGTGATGAAAATGCGGTTATCCGTATTGATATGTCCGAATATATGGAGAAGCACTCCACATCCCGTCTGGT AGGAGCGCCTCCAGGGTACGTTGGATATGAAGAAGGCGGTCAACTGACTGAGAAGGTACGTCGTAAGCCTTACTCTGTTG TGTTGCTGGATGAAATTGAAAAGGCACACCCAGAAGTATTCAATATTCTGCTGCAAGTGTTGGAGGATGGACGTCTGACG GATTCCAAAGGTCGTGTTGTTGACTTCCGTAACACACTCATCATTCTAACATCTAACGTTGGTGCGCAGGCAATCAAACG TAACTCCACGCTTGGTTTTACAGCTGTTGTGGACGCTGGGGCGGATTACGATAACATGAAGGGCAAAGTGATGGATGAAC TGAAGAAAAGTTTCCGTCCTGAGTTCTTGAACCGGATAGATGAAATTATCGTTTTCCATTCTCTCGAAGAAAAACATATT GCTGAAATTGTTTCACTTATGTCTGAGGAGCTGCGTAAGCGTCTGAATGAGTATGAGGTGGACTTTGAGTTGACAGACAA GGCTAAGAATTTCCTTGCTAAGGAAGGCTTCGATCCAGCGTATGGTGCGCGTCCATTGCGTCGTGCAATCCAGAAGCATA TTGAAGATCGCCTGTCCGAGGAACTGTTGACTGGAAACATTTCTAAAGGCGACTCTCTCTACATTGATGAAGAGAACGGT GCATTGACAGTAACGAAAAAGGATAATGTATCCGCGAAGTCCTAA Protein sequence : MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQDEVETLIGRGQEQPTNIAY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLNNLGISLNKARQQVLQLLGSSEAVSSHHGAPANVST PTLDSLARDLTASAKENNLDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIIANEIPETLRDKRVM TLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIVLFIDELHTLIGAGGAEGAIDASNILKPALARGELQCIGATTLDEY RKYIEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEAAVRLSDRYITDRFLPDKAIDLIDEAGS KVRLNSYTVPPNLKQLENRLEDIRKEKDSAVQSQEFEKAAALRDTEQKIREELDVTKNQWKEQQGRTDSEVTPEDIAQVV AIWTGVPVSKLKEEETHRLLNMEQLLHERVIGQEEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE SMFGDENAVIRIDMSEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLT DSKGRVVDFRNTLIILTSNVGAQAIKRNSTLGFTAVVDAGADYDNMKGKVMDELKKSFRPEFLNRIDEIIVFHSLEEKHI AEIVSLMSEELRKRLNEYEVDFELTDKAKNFLAKEGFDPAYGARPLRRAIQKHIEDRLSEELLTGNISKGDSLYIDEENG ALTVTKKDNVSAKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_008050046.1 | ATP-dependent Clp protease ATP-binding subunit clpC | VFG0079 | Protein | 0.0 | 77 |
| clpC | YP_008050046.1 | ATP-dependent Clp protease ATP-binding subunit clpC | VFG0080 | Protein | 1e-155 | 52 |
| clpC | YP_008050046.1 | ATP-dependent Clp protease ATP-binding subunit clpC | VFG2084 | Protein | 9e-97 | 41 |
