Gene Information

Name : yrhB (PPM_2116)
Accession : YP_005959760.1
Strain : Paenibacillus polymyxa M1
Genome accession: NC_017542
Putative virulence/resistance : Resistance
Product : cystathionine beta-lyase
Function : -
COG functional category : -
COG ID : -
EC number : 4.4.1.8
Position : 2416181 - 2417311 bp
Length : 1131 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACGCAAAACAAAACTGATTCACGGTGGACTCCCTACCGATCCTCATACTGGCGCGGTTAACGTTCCTATTTATCA
GGTAAGCACTTATGAGCAAGAGGAAATCGGCGTTCATAAGGGATACGAGTATTCGCGTACAGGCAACCCGACTCGGTTTG
CACTGGAAGAGCTGATCAAGGAACTGGAGGAAGGCACACGCGGTTTTGCTTTCGGTTCGGGTATGGCAGCGATTCATGCA
GTGTTTTCCTTGTTTAAAGCAGGGGATCATATTTTGCTGACCGATGATGTATACGGGGGCACTTATCGTATTGTAAGCAA
AGTGCTTAGTCGGATCGGGATTGAGTCCACATTTGTGGATACAACTGATCTGGAGGCTATTTCTAAAGCAATCCGTCCGA
ATACGAAGGCATTGTATGTCGAAACACCAACAAATCCGCTGTTGAAAGTTACTGATATCCGCGCAGTTTCAGAACTGGTG
AAAAAGCATGAGCTTTTGTTGATTGTGGACAATACATTTGCTACCCCTTACTGGCAGACGCCAATTACACTCGGGGCTGA
TATCGTCGTACACTCCGCAACCAAATATTTGGGTGGACACAGCGATGTTGTAGCCGGTCTGGCTGTAGTCAACAGTGAAG
AGCTGGGCGAGCAGCTTCATTTTCTGCAAAACGCCATTGGCGGTATTCTCGGTCCGCAGGATTCATGGTTATTGATTCGT
GGTATCAAAACCTTGGGTCTGCGTATGGAAGCAATTGAGAAAAATGCAAAGGAAATTGCAGCCTTTTTGGAAAAGCATCC
GAAGGTTAGTAAGGTGTACTACCCTGGGCTGGAAAGCCATGCACAGCACGAGCTGTCCAAAATTCAAGCTGAAGGCTTTG
GCGGCATCATTTCCTTTGATGTAGGTAGCGATGCTAACGCGGTTGCCCTCCTGAAAAAAGTAAAGTATTTTACATTGGCT
GAGAGCTTGGGAGCGGTTGAAAGTCTGATTAGCGTTCCAGCACGTATGACGCACGCCTCCATTCCGGCAGAACGCCGTGC
AGAGCTAGGTATTACAGAAGGCTTGGTACGGATTTCGGTTGGGATCGAAGATCTGGAGGATTTGATCGAAGACTTGCAGT
CAGCATTGTAA

Protein sequence : 
MKRKTKLIHGGLPTDPHTGAVNVPIYQVSTYEQEEIGVHKGYEYSRTGNPTRFALEELIKELEEGTRGFAFGSGMAAIHA
VFSLFKAGDHILLTDDVYGGTYRIVSKVLSRIGIESTFVDTTDLEAISKAIRPNTKALYVETPTNPLLKVTDIRAVSELV
KKHELLLIVDNTFATPYWQTPITLGADIVVHSATKYLGGHSDVVAGLAVVNSEELGEQLHFLQNAIGGILGPQDSWLLIR
GIKTLGLRMEAIEKNAKEIAAFLEKHPKVSKVYYPGLESHAQHELSKIQAEGFGGIISFDVGSDANAVALLKKVKYFTLA
ESLGAVESLISVPARMTHASIPAERRAELGITEGLVRISVGIEDLEDLIEDLQSAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-110 62
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 7e-109 61
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 9e-78 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yrhB YP_005959760.1 cystathionine beta-lyase BAC0207 Protein 2e-65 42