Gene Information

Name : KPN2242_25546 (KPN2242_25546)
Accession : YP_005957498.1
Strain :
Genome accession: NC_017541
Putative virulence/resistance : Unknown
Product : IS2 repressor TnpA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 79825 - 80190 bp
Length : 366 bp
Strand : +
Note : COG2963 Transposase and inactivated derivatives

DNA sequence :
ATGATTGATGTTTTAGGTCCAGAGAAGCGCAGACGGCGCAGTGTTCAGGAAAAAATCGCCATTGTTCAGCAGAGCTTTGA
ACCCGGTATGACCGTCTCGCTGGTCGCCCGGCAGCATGGTGTTGCCGCCAGTCAGCTGTTCCTGTGGCGCAAGCAGTATC
AGGAAGGCAGTCTTACCGCCGTTGCCGCGGGTGAACAGGTTGTGCCCGCGTCGGAACTGGCATCGGCAATGAAGCAAATT
AAAGAACTGCAGCGCCTGCTGGGCAAGAAAACTATGGAAAACGAGCTGCTGAAAGAAGCCGTTGAATATGGCCGCCAAAA
AAAGTGGATAGCGCACGTGCCCTTGTTGCCGGAGGATGGCGAATAA

Protein sequence :
MIDVLGPEKRRRRSVQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELASAMKQI
KELQRLLGKKTMENELLKEAVEYGRQKKWIAHVPLLPEDGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 5e-51 96
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 8e-51 96
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 8e-51 96
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 8e-51 96
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 5e-51 96
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 5e-51 96
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 7e-51 96
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 1e-50 96
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 2e-50 95
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 3e-50 95
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 3e-50 95
unnamed AAL67376.1 insertion sequence protein Not tested PAI II CFT073 Protein 9e-37 86
insC YP_002414034.1 IS2 insertion element repressor InsA; KpLE2 phage-like element Not tested Not named Protein 3e-36 86
insC YP_854262.1 IS2 transposase Not tested PAI I APEC-O1 Protein 3e-30 77
c5196 NP_757044.1 transposase insC Not tested PAI II CFT073 Protein 3e-30 77
insC AAZ04431.1 IS2 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-30 77

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KPN2242_25546 YP_005957498.1 IS2 repressor TnpA VFG0648 Protein 3e-51 96
KPN2242_25546 YP_005957498.1 IS2 repressor TnpA VFG0622 Protein 8e-51 95
KPN2242_25546 YP_005957498.1 IS2 repressor TnpA VFG0609 Protein 8e-51 95
KPN2242_25546 YP_005957498.1 IS2 repressor TnpA VFG1733 Protein 8e-37 86