Gene Information

Name : KPN2242_01530 (KPN2242_01530)
Accession : YP_005952795.1
Strain : Klebsiella pneumoniae KCTC 2242
Genome accession: NC_017540
Putative virulence/resistance : Unknown
Product : site-specific recombinase, phage integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 325215 - 326468 bp
Length : 1254 bp
Strand : +
Note : COG0582 Integrase

DNA sequence :
ATGGCTCTGAGTGATGTGAAGGTTCGTTCAGCTAAGCCTGAAGCAAAAGCCTATAAACTGACTGACGGTGAAGGCATGGT
TTTGCTGGTTCACCCTAACGGCTCCAAATATTGGCGGCTTCGTTATCGCTTCGGTGGGAAAGAGAAGATGCTGGCGCTGG
GGAAATACCCTGAAGTGTCGCTGGCGGATGCCAGGGCACGCCGGGACGAAGCCCGTAAGCTATTAGCTAATGACGTCGAT
CCCAGTGAGAATAAGAAAGCCGTTAAGGTAGAGCAGGAGCAAGAGGCGATAACTTTTGAAGTGGTTGCCAGAGACTGGCA
CGCCAGCAATCAGAAGTGGTCTGCATCGCATAGTGCTCGTGTATTGAAAAGCCTCGAAGATAATCTCTTTGCTGTCATCG
GTAAGCGGAACATTGCTGAATTGAAGACACGGGATCTGCTTGTACCCATCAAAGCAGTCGAGTCGTCCGGACGTCTTGAA
GTTGCGGCTCGTTTGCAACAGCGAACTACCACGATTATGCGCTATGCCGTTCAGAGTGGCTTAATCGACTACAACCCCGC
GCAGGAGATTGCTGGTGCGGTTGCTACGGCGAAAAGACAGCATCGTGCGGCTTTGGAGCTTAACCGCATACCTGAATTAC
TTCATCGCATTGATCATTACACCGGCAGGCCTTTAACTCGATTAGCTGTCGAGCTCACTTTGTTAGTGTTTATCCGTTCA
AGCGAACTGCGCTTTGCCCGTTGGTCAGAAGTGAATTTTGAAACGGCCATGTGGACGATCCCAGGTGAGCGTGAACCGCT
GGAAGGTGTTAAGCATTCGCAGCGTGGTTCAAAGATGCGGACGCCCCATCTTGTTCCCTTGTCGCGTCAGGCCTTAGCTA
TTCTGGAAAAGATCAAAAGCATGAATGGGAACAGAGAGCTGATCTTCGTTGGCGATCACGATCCGCGTAAGAACACGGTT
AACAAGGCCTTGCGTGTGATGGGCTACGATACGAAGGTTGAGGTTTGCGGGCATGGTTTCAGGACTATGGCATGTAGTTC
ATTGATTGAATCAGGGTTGTGGTCGAAGGATGCGGTAGAAAGGCAGATGAGTCACCAGGAGCGTAACACTGTGCGTGCGG
CTTATATTCATAAGGCAGAGCATTTGGGGGAGAGGAGGCTGATGCTGCAGTGGTGGGCGGATTATCTTGATGCGAATAAA
ATGGCTGCTATCACTCCATTTGACTATGCAAAGATTAATAGTCCTTTTCGATAA

Protein sequence :
MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVSLADARARRDEARKLLANDVD
PSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSARVLKSLEDNLFAVIGKRNIAELKTRDLLVPIKAVESSGRLE
VAARLQQRTTTIMRYAVQSGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYTGRPLTRLAVELTLLVFIRS
SELRFARWSEVNFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKIKSMNGNRELIFVGDHDPRKNTV
NKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHQERNTVRAAYIHKAEHLGERRLMLQWWADYLDANK
MAAITPFDYAKINSPFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-145 78
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-142 69
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-141 69
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-141 69
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-140 69
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 5e-141 68
int AAK00456.1 Int Not tested SHI-1 Protein 8e-133 68
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-142 68
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-142 68
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-142 68
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-142 68
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-141 68
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-140 68
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-141 68
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-141 68
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-141 68
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-141 68
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-141 68
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-141 68
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-141 68
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-141 68
int CAC81896.1 integrase Not tested LEE II Protein 8e-132 68
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-124 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-124 61
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 6e-80 58
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-113 57
int CAA08754.1 integrase Not tested HPI Protein 1e-105 56
int CAB59974.1 integrase Not tested HPI Protein 3e-106 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-91 56
int YP_002346908.1 integrase Not tested HPI Protein 4e-105 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 4e-105 55
int2 NP_993013.1 integrase Not tested HPI Protein 4e-105 55
int CAA21384.1 - Not tested HPI Protein 4e-105 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-106 55
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-106 55
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-102 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-100 52
int AAD44730.1 Int Not tested SHI-2 Protein 1e-79 43
int CAC39282.1 integrase Not tested LPA Protein 3e-80 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-80 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-78 42
int ACU09430.1 integrase Not tested LEE Protein 2e-78 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-78 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-78 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-78 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-78 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-78 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KPN2242_01530 YP_005952795.1 site-specific recombinase, phage integrase family protein VFG1536 Protein 2e-145 78
KPN2242_01530 YP_005952795.1 site-specific recombinase, phage integrase family protein VFG0626 Protein 7e-143 68
KPN2242_01530 YP_005952795.1 site-specific recombinase, phage integrase family protein VFG1693 Protein 4e-142 68
KPN2242_01530 YP_005952795.1 site-specific recombinase, phage integrase family protein VFG0783 Protein 1e-78 42
KPN2242_01530 YP_005952795.1 site-specific recombinase, phage integrase family protein VFG0598 Protein 1e-78 42