Gene Information

Name : OCA4_c14830 (OCA4_c14830)
Accession : YP_005950504.1
Strain : Oligotropha carboxidovorans OM4
Genome accession: NC_017538
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1598385 - 1599059 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence : 
TTGCGCCTTCTCGTTGTCGAAGATGATCCCGATCTCAACCGCCAGCTCACCACGGCCTTGAGCGATGCGGGCTATGTCGT
CGACCGCGCGTTCGATGGCGAGGAAGGCCATTTCCTCGGCGACAACGAGCCTTATGATGCGGTCGTGCTCGACATCGGGT
TGCCGAAGATGGACGGAATCTCGGTGCTGGAATCCTGGCGGCGCAACAAGCGGATCATGCCCGTCCTCATTCTGACGGCG
CGCGACCGCTGGAGCGACAAGGTGCAGGGCTTCGATGCCGGTGCCGACGATTACGTCGCAAAGCCTTTCCACCTCGAAGA
AGTGCTGGCGCGGATTCGCGCGCTGCTGCGCCGCTCGACCGGCCATGCCCAAAGCGAACTGACCTGCGGCTCCGTCGTGC
TCGACACGCGCACCGGCCGCGTCACGGTCGATGGCAATCCGATCAAGATGACGTCGCACGAGTACCGGCTGCTGGCGTAT
CTCATGCATCATGCCGGCCGCGTGGTGTCCCGCACCGAGCTCGTCGAACATCTTTACGATCAGGATTTCGACCGCGACTC
GAACACCATCGAAGTGTTTGTCGGCCGCATCCGCAAGAAACTTGGCGTCGAAATCATCCAGACCGTGCGCGGCCTCGGCT
ATCTGCTGGCGCCGCCGTCACCCGATGCGCGCTAA

Protein sequence : 
MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGISVLESWRRNKRIMPVLILTA
RDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSTGHAQSELTCGSVVLDTRTGRVTVDGNPIKMTSHEYRLLAY
LMHHAGRVVSRTELVEHLYDQDFDRDSNTIEVFVGRIRKKLGVEIIQTVRGLGYLLAPPSPDAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OCA4_c14830 YP_005950504.1 transcriptional regulator NC_002516.2.879194.p Protein 2e-45 47
OCA4_c14830 YP_005950504.1 transcriptional regulator CP000647.1.gene1136. Protein 4e-40 45
OCA4_c14830 YP_005950504.1 transcriptional regulator BAC0530 Protein 4e-40 45
OCA4_c14830 YP_005950504.1 transcriptional regulator CP004022.1.gene1005. Protein 5e-42 44
OCA4_c14830 YP_005950504.1 transcriptional regulator BAC0487 Protein 2e-35 44
OCA4_c14830 YP_005950504.1 transcriptional regulator NC_002695.1.913289.p Protein 1e-39 43
OCA4_c14830 YP_005950504.1 transcriptional regulator CP000034.1.gene2022. Protein 3e-40 43
OCA4_c14830 YP_005950504.1 transcriptional regulator CP001918.1.gene2526. Protein 5e-39 43
OCA4_c14830 YP_005950504.1 transcriptional regulator CP001138.1.gene1939. Protein 4e-40 43
OCA4_c14830 YP_005950504.1 transcriptional regulator BAC0125 Protein 5e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OCA4_c14830 YP_005950504.1 transcriptional regulator VFG0475 Protein 3e-40 43
OCA4_c14830 YP_005950504.1 transcriptional regulator VFG0473 Protein 3e-34 43
OCA4_c14830 YP_005950504.1 transcriptional regulator VFG1390 Protein 3e-32 41