Gene Information

Name : ybbA (LMM7_0215)
Accession : YP_005946279.1
Strain : Listeria monocytogenes M7
Genome accession: NC_017537
Putative virulence/resistance : Virulence
Product : putative metabolite uptake ABC transporter, ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 216717 - 217409 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAAAACCGCTAATTGACATGAAAAATTTAACAAAAACATATACGCTAGGCGGAGAGACTTTTAAAGCATTAGACGA
TGTTACTTTTACCGTTGAGCAAGGCGAGTTTTTATCCATCGTTGGCCCGTCCGGTTCCGGTAAATCCACTTTAATGAATA
TGATTGGCTGTTTAGATGTTCCAGATGAAGGCAGCTATCATCTCGATAATGTAGATGTTTTTAAACTAAGTGATAATAAA
CTATCCGAAATCAGAAACAAAAAGATTGGCTTTATTTTTCAGCAGTTTAATTTACTTCCTAAATTATCTGCCTTCGAAAA
TGTAGAATTGCCGCTAATTTATGCAGGGCTTAGCGTTTCCGCTCGAGAAAAAGCTGCTATCGAATGCTTGGAAAAAGTAG
GTTTACTTGAGAAACGCAGAAATCTACCAACGCAACTTTCGGGTGGACAACAACAACGTGTGGCTATTGCTAGAGCGCTT
GCTGGAAAACCGCAAATTTTACTAGCAGATGAACCAACTGGTGCACTCGATTCGAAAACAGGTAAAGAAGTAATGGGAAT
ACTGCAAGAATTGAATCGTGCAGGAAACACCATTGTTATGATTACGCATGATCCAACAATCGCCTCATACGGTACAAGAA
GTATCCGTATTCAAGATGGTAAATTATTCCATGAGGAGGCGACGCAAGCATGA

Protein sequence : 
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDNVDVFKLSDNK
LSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARAL
AGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-35 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_005946279.1 putative metabolite uptake ABC transporter, ATP-binding protein NC_012469.1.7686878. Protein 6e-61 56
ybbA YP_005946279.1 putative metabolite uptake ABC transporter, ATP-binding protein CP001581.1.gene798.p Protein 4e-44 49
ybbA YP_005946279.1 putative metabolite uptake ABC transporter, ATP-binding protein CP001581.1.gene598.p Protein 2e-42 48
ybbA YP_005946279.1 putative metabolite uptake ABC transporter, ATP-binding protein NC_008702.1.4606598. Protein 4e-45 46
ybbA YP_005946279.1 putative metabolite uptake ABC transporter, ATP-binding protein NC_012469.1.7685735. Protein 4e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_005946279.1 putative metabolite uptake ABC transporter, ATP-binding protein VFG0869 Protein 6e-22 45