Gene Information

Name : TIB1ST10_01840 (TIB1ST10_01840)
Accession : YP_005943959.1
Strain : Propionibacterium acnes 6609
Genome accession: NC_017535
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 407775 - 408455 bp
Length : 681 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGACCCGCGTACTCATCATCGAGGACGAAGAGTCCTATCGCGAGGCCACCGCCTTCATGCTGCGCAAAGAGGGATTTGA
GGTCAACACTGCCGCCAATGGCGCTGATGGCCTCGAAATCTACTCGCGCAACGGTGCCGACATCGTGCTGCTCGACCTCA
TGATGCCGGGGCTTCCAGGGACCGAAGTCTGCCGTCAGCTACGCCAGCGCGGCAATGTCGGGATCATCATGGTGACGGCT
AGAGATTCGGAGATCGACAAGGTTGTCGGGCTGGAGCTCGGAGCCGACGACTACGTCACCAAACCGTTTAGCCACCGAGA
ATTGGTCGCGCGCATCCGCGCTGTGACTCGTCGTGGCAGCCCCGAAGTAGAAGTTTCCCCCGATGTTCTCGAGGAGAGCG
GGGTAAGGATGGACGTCGAGCGGCACGAGGTCAGCGTCGAGGGGACGGTAGTGCGACTTGCCCTCAAAGAGTTCGACCTG
CTTGAGGTGCTGCTGCGCAATGCAGGACGCGTCATGACCCGAGCCTCCCTCATCGACCGAGTGTGGGGAGCCGACTATGT
TGGCGACACTAAAACTCTTGACGTGCACATCAAAAGGCTGCGCGCAAAGATTGAAGATGACCCATCCCGTCCGGTGCGCA
TCACCACCGTACGCGGACTGGGCTACAAGTTTCAGGCCTAA

Protein sequence : 
MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLPGTEVCRQLRQRGNVGIIMVTA
RDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSPEVEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDL
LEVLLRNAGRVMTRASLIDRVWGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGYKFQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TIB1ST10_01840 YP_005943959.1 response regulator NC_012469.1.7685629. Protein 8e-47 46
TIB1ST10_01840 YP_005943959.1 response regulator NC_012469.1.7686381. Protein 4e-46 44
TIB1ST10_01840 YP_005943959.1 response regulator AE000516.2.gene3505. Protein 2e-40 44
TIB1ST10_01840 YP_005943959.1 response regulator HE999704.1.gene2815. Protein 5e-45 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_002952.2859905.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_007793.3914279.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_007622.3794472.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_002745.1124361.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_009782.5559369.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_002951.3237708.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_002758.1121668.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_003923.1003749.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_009641.5332272.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator NC_013450.8614421.p0 Protein 4e-43 43
TIB1ST10_01840 YP_005943959.1 response regulator AE016830.1.gene1681. Protein 7e-47 42
TIB1ST10_01840 YP_005943959.1 response regulator AE015929.1.gene1106. Protein 5e-33 41
TIB1ST10_01840 YP_005943959.1 response regulator HE999704.1.gene1528. Protein 5e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TIB1ST10_01840 YP_005943959.1 response regulator VFG1386 Protein 1e-32 42
TIB1ST10_01840 YP_005943959.1 response regulator VFG0596 Protein 6e-32 41
TIB1ST10_01840 YP_005943959.1 response regulator VFG1389 Protein 2e-29 41