Gene Information

Name : PSTAA_1279 (PSTAA_1279)
Accession : YP_005937931.1
Strain : Pseudomonas stutzeri DSM 4166
Genome accession: NC_017532
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1364879 - 1366891 bp
Length : 2013 bp
Strand : -
Note : -

DNA sequence :
ATGCGGCTGTTCTTGTGCGAGAAGCCCTCCCAGGGCAAGGATATTGGCCGGATTCTCGGCGCGACGCAGCGCGGTGAAGG
CTGCCTCAGCGGCTCCGGCGTCACGATTACCTGGTGCATCGGCCATCTCGTAGAAGCGGCAGCACCCGAAGTCTATGACG
CGGCGCTCAAGCGCTGGTCACTGGAGCAGTTGCCCATCATTCCCCAGCAGTGGCGGGTCGAGGTCAAACCCAAGACCGCC
ACGCAATTCAAGGTCGTCAAGGCGCTTCTGGCGAAGGCGACCCATCTCGTCATCGCCACCGATGCCGACCGCGAGGGCGA
GCTGATCGCCCGCGAGATCATCGACCTGTGCGGCTACCGTGGTCCCATCGAGCGCTTGTGGCTGTCGGCGCTCAACGATG
CGTCGATCCGCACCGCGCTCGGCAAGCTGCGACCGTCGTCCGATACGCTGCCGATGTATTACTCGGCGCTGGCGCGTTCG
CGGGCAGACTGGCTCGTGGGCATGAACCTCAGCCGTCTTTTCACGCTGCTCGGGCGGCAGGCGGGCTACGACGGCGTGCT
GTCGGTCGGACGTGTCCAGACCCCGACCCTGAAGCTGGTCGTTGATCGCGACCGCGAAATCGCGGCTTTCAAGTCGGCGC
CGTTCTGGGCCATCGACGTGTCTCTGTCCACAGAGGGTCAGGCTTTCTCCGCGCAGTGGGTTGCGCCCGACGGCTGCACC
GACGACGCCGGTCGTTGCCTGCAACAGCCGGTCGCCCAGCAGGCGGCGCTGCAGATTCGCGTCGCGGACAACACCCAGGT
GGTGTCGGTCGAGACCGAGCGCGTGCGCGAAGGCCCGCCACTGTTGTTCGACCTGAGCACCTTGCAGGAGGTCTGTTCCA
AGCAGCTCGGGCTGGACGTGCAGGAGACATTGCAGATCGCCCAGGCCCTGTACGAGACGCACAAGGCCACGACCTACCCG
CGCTCGGACTCCGGCTATCTGCCCGAAAGCATGTTCGCCGAGGTGCCCGCCGTCCTGGACAGCCTGCTCAAGACCGATCC
GTCGCTGCGCCCGATCATGAGCCAGCTCGACCGCTCCCAGCGTTCGCGTGCATGGAACGACGGCAAGGTCACGGCGCACC
ACGGCATCATTCCGACGCTCGAACCCGCGAACCTCTCTCCTCTGAGCGAGAAGGAACTGGCGGTGTACCGGCTGATCCGG
GCGCATTACCTGGCGCAGTTCCTCCCGCACCACGAGTTCGACCGTACCGTGGCTGAGTTTTCCTGCGGCCAGCAGATGCT
GGTGGCCACCGGTAAACAGGTGGTCGTCAAAGGCTGGCGTCTGGTGCTGGCCGAACCGCAAGCGGATGAGGACGGCGACG
ACGCGGCGCGCAGCCAGGTGCTGCCCCCGCTGCGTGGGGGCCTGGCGTGCCAGGTGGCTGAGGTCGAGATCAAGGCGCTC
AAGACGATGCCGCCCAAGCCCTACACCCAGGGCGAACTGGTCAAGTCGATGAAGGGCATTGCGCGCTTCGTGACCGACCC
GCGCCTGAAGCAGAAGCTCAAAGACACGACGGGCATCGGCACCGAGGCGACGCGGGCCAACATCATCAGCGTGCTGATCG
CCCGTGGCTACATCGTGAAGAAGGGGCGCTCCATTCGCGCATCGGATGCGGCGTTCACGCTGATCGACGCCGTGCCCGCA
GCGATTGCAGACCCCGGCACGACGGCAGTGTGGGAGCAGGCGCTCGACATGATCGAGGCGGGACAGCTCACCCTGGACGT
ATTCCTCAGCAAGCAGGCCGCCTGGATTTCGCAGTTGATCGCGCAGTACGGCAGCATGTCCCTGTCCATCAAGCTTCCCC
ATGGGCCAGCATGTCCGCAGTGCGGCGCAGCGACGCGCCAGCGCACCGGCAAGAGCGGCCCATTCTGGTCGTGCAGTCGC
TACCCCGACTGCAAAGGCACGCTGCCGGTCGAATCCGGTACGCCCAAGCGTGGCGCTTCGCGCTCGCGTAGCAGCGGCCG
CAAAGGCGCCTGA

Protein sequence :
MRLFLCEKPSQGKDIGRILGATQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRWSLEQLPIIPQQWRVEVKPKTA
TQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYRGPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARS
RADWLVGMNLSRLFTLLGRQAGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQAFSAQWVAPDGCT
DDAGRCLQQPVAQQAALQIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQLGLDVQETLQIAQALYETHKATTYP
RSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQLDRSQRSRAWNDGKVTAHHGIIPTLEPANLSPLSEKELAVYRLIR
AHYLAQFLPHHEFDRTVAEFSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQVAEVEIKAL
KTMPPKPYTQGELVKSMKGIARFVTDPRLKQKLKDTTGIGTEATRANIISVLIARGYIVKKGRSIRASDAAFTLIDAVPA
AIADPGTTAVWEQALDMIEAGQLTLDVFLSKQAAWISQLIAQYGSMSLSIKLPHGPACPQCGAATRQRTGKSGPFWSCSR
YPDCKGTLPVESGTPKRGASRSRSSGRKGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 87
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 76
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 63
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-169 51
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 4e-169 51
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 4e-169 51
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 1e-167 51
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 2e-168 50
topB AAW83109.1 TopB Not tested GGI Protein 5e-122 41