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Name : hofB (PAJ_0082) Accession : YP_005932958.1 Strain : Pantoea ananatis AJ13355 Genome accession: NC_017531 Putative virulence/resistance : Virulence Product : protein transport protein HofB Function : - COG functional category : - COG ID : - EC number : - Position : 98007 - 99494 bp Length : 1488 bp Strand : - Note : similar to Pantoea sp. At-9b, type II secretion system protein E (NCBI: ZP_05729800.1) COG: intracellular trafficking, secretion, and vesicular transport subcellular localization as predicted by Psort 2.0: cytoplasmic DNA sequence : ATGAAGGCAGCATTCAGTGGCAGCGCACCTGTACCAGCGCTAATACCACGCTACGTGATAATTGTCAGGAGCAGTTCCGC TTTGCCGATCGGGGAGGTGCCTATGCCCACGTCTGATGATGCGATTGCGCTCATCTGCCAGCGCTTTCGGGCGATTGTCC TTGAGCACAGTGCGACACACTTGCGCCTTGCCGTTCCTGAAAGCGTCCCGGCGGGCCTGATGGAGGCATTACAGTTTGCC AGCCAGTGTCAGGCAGAGGTGGAGTGCTGGCCTCGTGCCCGGATAGAACAGTTTGAATCGATGCGTAAACCTTTGGTGGC CAATGAAAAAGCTCCCGGCGAATCGACCATTGATACGGCCAGTCAGCTTTTGCGCCAGGCAACTCTGCGTCGTGCATCGG ATATTCATATCGAACCCTATCAGAGCACCCTGCGTATTCGCCTGCGGATTGACGGGGTCCTGCATCCTCTCCCCCTGCAG TTTGATACACAACCGGCTGCGCTGCTGGCACGACTGAAAATTCTGGCCGGTCTGGATATTGCCGAACGGCGCCTGCCTCA GGACGGACAGTTTAGTTGTGACATTGACGGAAAATCGGCCTCTTTTCGGCTCTCTACCCTGCCCGTTCAGGGCGGCGAAA AAGCCGTCGTTCGCCTGCTTCAGAGTGAGGGCGCGGCCTTGTCGCTGGACAAGCTGGGATTACCCACCGCGCAGTTACGC CTTCTGACCGCCGCGCTCAGGCAGCCACAAGGGCTGATTTTGGTAACGGGCCCTACCGGGAGTGGCAAAACCTTCACGCT TTACAGTGGCCTGAGCGCGATCAACCAGCCTGATAAGAATGTCTGCAGCGTGGAAGATCCTGTTGAAATCCCTCTCCCCG GTATCAACCAGACCCAGATTAATCCAAAGTATGGCCTTGATTTTAATCGCGTGTTACGCGCCCTGTTACGTCAGGATCCG GACGTGATGATGGTCGGTGAAATACGTGACGGCGAGACGGCGGAGATTGCCGTTAAGGCAGCTCAGACCGGTCATCTGGT TCTCTCTACCCTGCATACTAACTCGACAGCGGAAACCCTGACGCGCTTGCGTCAAATGGGCATTCCCGGTTATCTGCTGG GTTCCGCACTTCGTTTGATCGTTGCCCAGCGGCTGGTCAGGCGTTTGTGCCCTCACTGCCGTAAGCCAGCACAGGCTGTT GCCCACTTTCCCGCCTCACTTTGGCCCGGAACGTTACAAACCTGGCGGGCGCCGGGCTGCGATCACTGCTTCTCCGGTTA TTTTGGTCGGCTGGCCTTGTTTGAATTACTGCCCATAACGGCTAAGTTACAAAACGCCATTGCCGCCGAAATGCCACTTG AGGGCTTGCTGAGTCTGGCAAAACAGCAGGGCATGCGCACCCTGCTGGCGTCGGGTCTTGAAGCCGTCAGCCGTGGGGAT ACCTCCCTGGAAGAAATGCAGCGCGTTGTCGGACTGGATAATGACTAG Protein sequence : MKAAFSGSAPVPALIPRYVIIVRSSSALPIGEVPMPTSDDAIALICQRFRAIVLEHSATHLRLAVPESVPAGLMEALQFA SQCQAEVECWPRARIEQFESMRKPLVANEKAPGESTIDTASQLLRQATLRRASDIHIEPYQSTLRIRLRIDGVLHPLPLQ FDTQPAALLARLKILAGLDIAERRLPQDGQFSCDIDGKSASFRLSTLPVQGGEKAVVRLLQSEGAALSLDKLGLPTAQLR LLTAALRQPQGLILVTGPTGSGKTFTLYSGLSAINQPDKNVCSVEDPVEIPLPGINQTQINPKYGLDFNRVLRALLRQDP DVMMVGEIRDGETAEIAVKAAQTGHLVLSTLHTNSTAETLTRLRQMGIPGYLLGSALRLIVAQRLVRRLCPHCRKPAQAV AHFPASLWPGTLQTWRAPGCDHCFSGYFGRLALFELLPITAKLQNAIAAEMPLEGLLSLAKQQGMRTLLASGLEAVSRGD TSLEEMQRVVGLDND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-64 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-64 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_005932958.1 | protein transport protein HofB | VFG2426 | Protein | 2e-75 | 49 |
| hofB | YP_005932958.1 | protein transport protein HofB | VFG2048 | Protein | 1e-65 | 45 |
| hofB | YP_005932958.1 | protein transport protein HofB | VFG0182 | Protein | 8e-65 | 45 |
| hofB | YP_005932958.1 | protein transport protein HofB | VFG1876 | Protein | 4e-67 | 44 |
