Gene Information

Name : mrfD (PAJ_0412)
Accession : YP_005933288.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Virulence
Product : periplasmic chaperonin (mannose-resistance fimbriae), MrfD protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 518559 - 519299 bp
Length : 741 bp
Strand : +
Note : similar to Erwinia tasmaniensis Et1/99, periplasmatic chaperonin (mannose-resistance fimbriae), MrfD protein (NCBI: YP_001906353.1)

DNA sequence : 
ATGTCTAAAATATGCAAAACGTCTTTCTTGAGTTTGATAACTCTGATGGTAACAACGGCTATTCCTGTGGCGAATGCGGC
AGTGGGACTTGATCGCACTCGTCTGATAATTAATGGTGATCAAAAGTCAGAGACAGTAACAGTTACCAATCACAATAAAG
AAGCACCTTATCTTGCTCAGGCATGGGTTGAAGATGAATCAGGTAAGAAACTTGAAAACGAATTTATTGCATTACCGCCT
TTGCAACGTATTGAACCTAAATCGAAAGGTCAGATAAAAGTACAGGCGATGGGGGAAAGCGCTAATGCCCAGGATAGGGA
GTCGTTGTATTATTTTAACGTGCGCGAAATTCCGCCCAAAAGTAAAAAACCTAACACCCTGCAAATCGCATTACAGACAC
GTATAAAAATGTTTTATCGCCCGGCAAGCCTTAAGTTAGCTAGTGGAGATGTCCCCCAGGAAGCGATTACATTAACACGT
GAAGGTGACCGTTATCGTATTAATAACCCAACCGGTTATTATGTCACCGTGGTTGGTATGGGGTCGACCACTCAGGCCAG
CAATAATGAATTTAAGTCAGTGATGGTTGCGCCAAAAAGCAGCGAGCTTGCTGAAGCTAGCGCTGCGAAACTAGGGACAA
AACCGGTACTGACGTATATCAATGACTGGGGGGGGCGTCCTAAATTAATTTTTAGCTGCTCGGGTAATACATGTAAGGTT
ACTGATAAACAAGTAGGGTAA

Protein sequence : 
MSKICKTSFLSLITLMVTTAIPVANAAVGLDRTRLIINGDQKSETVTVTNHNKEAPYLAQAWVEDESGKKLENEFIALPP
LQRIEPKSKGQIKVQAMGESANAQDRESLYYFNVREIPPKSKKPNTLQIALQTRIKMFYRPASLKLASGDVPQEAITLTR
EGDRYRINNPTGYYVTVVGMGSTTQASNNEFKSVMVAPKSSELAEASAAKLGTKPVLTYINDWGGRPKLIFSCSGNTCKV
TDKQVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 4e-51 50
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 2e-49 48
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 7e-43 48
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 9e-50 47
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 7e-50 47
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 7e-50 47
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 7e-50 47
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 5e-50 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mrfD YP_005933288.1 periplasmic chaperonin (mannose-resistance fimbriae), MrfD protein VFG1547 Protein 9e-50 48
mrfD YP_005933288.1 periplasmic chaperonin (mannose-resistance fimbriae), MrfD protein VFG0885 Protein 3e-43 48
mrfD YP_005933288.1 periplasmic chaperonin (mannose-resistance fimbriae), MrfD protein VFG0896 Protein 3e-50 47