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Name : rhsD (PAJ_0397) Accession : YP_005933273.1 Strain : Pantoea ananatis AJ13355 Genome accession: NC_017531 Putative virulence/resistance : Unknown Product : protein rhsD precursor RhsD Function : - COG functional category : - COG ID : - EC number : - Position : 488026 - 492213 bp Length : 4188 bp Strand : - Note : similar to Erwinia tasmaniensis Et1/99, putative membrane-bound sugar-binding protein (NCBI: YP_001908915.1) COG: cell wall/envelope/membrane biogenesis subcellular localization as predicted by Psort 2.0: inner membrane DNA sequence : ATGTTTGAAGCTGCACGCCTCGGCGATGATATCGGTCACTCTCATGCCCTGGCGGGCATGATTGCAGGCACTATCGTCGG TGGACTGATCGCTGCGGCGGGCGGTATTGCTGCGGGTGCATTGATGATTGCCGGGATAGGCGCCTCCTGCCTTGGCGTGG GCGTATTGCTGGTTGGACTCAGTATCGGCGTGGGTTACCTTACTGGCGAACTGGCCACAGCCGCGCGAGACGGAATAGCG GATGCTGGGGCGGCCAGCATGACCCCAAAGGGCAAGATTACCACCGGTTCGCCCAACGTCTTTATTAACAGTAAACCCGC CGCCATGGCCACCAACAGCATAGTGGCCTGCAAGGACGATGGTCCGCAGCAGATGGCGGAAGGCTCCTCCCGGGTGTATA TCAACGGCCTGCCTGCATCACGCATCGACGATCGCACCACCTGCGATGCCAAAGTGATGACGGGCTCTGACAACGTCTAT ATCGGCGGCGAGCCTGAACAAACGCTGCCTATCCAACCTGAAGTGCCCGAATGGGTTTATAAAGCCTCCGATCTTACCCT GCTGTTTGCCGGGCTGGCCGGTGGCGTGGGCGGTGCGGCTGGCAAGGTCGGCGCGCTGGGTAAATTACTGAGCAAGATTC CCGGTATCAATAAAATCGCCCGGGTGGCCTGCCGTGCTGGTGCCTTGATGACCGGTGTGGCGGCCGCAGGTATTCTTGCC CGTCCCGTTGATATCGTAAGCGGCCAGAAGTTTCTTAGCGGCGATGATGAACTGGATTTTGTGCTGCCCTCCCGGCTGCC GCTACGCTGGCAGCGCTACTGGCGCAGCGGTAATCCCGGCGACAGCGTATTAGGCCGTGGCTGGAACCTGTTCTGGGAAA CACGGCTGGAACGTTACCAGGATGGGCTGGTCTGGCGTGCGTCCTCCGGCGATTACGTCTCTTTTCCTCTGGTGCCAAAA GGCCAGCGTACCTACTGCGAAGCGGAGAAACGCTGGCTGGAACATCATCGGGACGACAGTTGGTCATTGTATGACATCAG CGGTGAGCGCTGGCATTTTATGCCCCTGCGCGATGATGCCCCTTCTCTTCCCCTCTGCCTGACCGAGCCCTGCGGCAATG AGATTCAGTTCGACTGGAACCCCGATCACACATTGGCTGCGCTGACAGACAGTGCCGGTCAGCGCGTAACCTGCCGCTAT GCGAATAACCGGCTCGCAGGTGCCTGGCTGGATGACGATATTTGTCTGGTCAGTTACGCGTATGATGATATCGGCCAACT CGTTACGGTAACGGGCCGGGGCGGTAGCGTGCGCCGACGCTTCCAGTGGTGCGATGGCCTGATGGTCGCCCATGAAGATA TGAATGGCCTGCTAAGTGAGTATCGCTGGCAGGAGATCGATGGCCTCCCAAGAGTGGTGGCCTTCCGTCACAGCGGCGGC GAGCAGCTGGATTTTGAGTACGATTTTGATAATGGCATCCGACGCGCGCGACGTGATGACGGCGTTGAAGCTCACTGGCT CATTGACGATGACGATCATGTCGCCCGCTTTACCGACTTCGACGGCCGCCAGACCATGCTGGTTTACCGCGCAGGCGAGT TGTGCGATGTGATTATGCCCGGCGGTGCCATGCGCTGCAGCAACTGGGACCGCTATGGTCGCATGACGCAGGAGATCGAT CCGGTCGGACGTCGAACCACTTATCACTGGTTCCGCATGACTGACCGTGTGATCCGTACGGACTATCCCGATCTGAGCGC GACTCAGGCGGCTTACGATCTTAATGTTCGCCTGCTGACTGAAACCGATGCGCTCAATAACGTCACCACCTATCACTACC CTGATGACACAGAACTGCTGCCAGACAGCATCACCGATGCAACGGGCGGCGTGGTGAAGCTGGAATGGAACCGACAAGGG CTGCTGACGCAGCGCACCGACTGCTCTGGCAGCGTAACGACGTTTAGCTACGACCGATTTGGCCAGCTTGTTCGCAGCGT GGATGCTGAAGGTCATGTCACCCAGCGCGAGTGGAATGACAAGGGACAACTCTGCGCCATTATCCATCCAGACGGTAGCC GGGAAACCCTACACTGGAACACCCAGGGGCAGCTCAGTGCGTGGCGCGATCCGCTGGAAACCGAAGTCCGCTGGACCTAT AACGCACTCGGATTACCGGTGAGCCTGACGGACCGCATTGGTCGCACGCGTCGCTGGCATTACGATGCCCGTGGTAATCT GCTGCGGCTGGAAAACGGCAACGGCGGTGACTATCGCTTTACCTGCGATCCGCTCGGCCGTCCATTGAGTGAGATCCGGC CCGATAAGACCTCACGCAATATGGAATGGAATGCTCGTGGCTTTCTCATTGGTTTACAGGAAAATGGCCAGCCCGCTAAT GACGGTGGCATAGCTCGACGCTGGCAGCGCTTTAGCTACGACGACAGCGGCTTGATTACCCAGCGCACAACGCAGCATGC TGAATACCACTACCGGCGTCATCGTAGCGGTCAACTTGCCAGCCTGGTTCGCACGCCGACCAGCGACGGAATGGCGCTTG GTATCGAAGACGATGAAATCGCCTTTACCTATGACGTCGCAGGTCAGCTCTTAACAGAAGCTGGTATAAACGGGAAACTG GATTACGAATGGGATGCGCTGGGCAACCTCACCCATCTGACCCTGCCGGGTGAACAGCAACTTGCCTGGCTGCACTACGG TTCGGGTCACGTCAGCGCGATTCGCTTTAATCAGCAACTGGTCAGTGAATTTACCCGCGACCGCCTGCACCGGGAAATTC GCCGCAGTCAGGGCGCGCGTGAGCAGGCGCGTCAGTACGACAGCCTTGGCAGGCGCACGATGCAGCGCAGTGAATTGCAT AGCGAGGTGGTGCTACCGGAAAAAGCCATTCTGGAACGCGCTTTCCGCTATTCGGCGCGCAGTGAACTGGAGTCTGTCAG TGATACGCTGCGCGGCGACATTATCTATGGTTACGATGATGAAGGCCGCCTGCTGAAGCACTACGAAGCCAGACAGGGTC ACAGCACCTCGCATTTTGCTTACGATAACGCGGACAACCTGGCGGCAAACGACGATGCACTGCACGCGTTGCCAGTTACC GACAACCGTCTGCATCACTGGCAGAACCTGTTTATGAAGTACGATGACTGGGGCAACCTGGTCAGTCGACGCAGCGGCCT GCATGAGCAGCATTTTACCTATGACGCCGAAAACCGGCTCATCAGCGCCAAAGGCAATGGCCCGGACGGCGGGTTTACCG CACACTATCATTATGATGCGCTGGGCAGGCGCACCCGCAAAGTGGTCAGCACCCAGCACGATCGTAAAGAAGTCCGTTTT CTGTGGCAGGGCTATCGCCTGTTACAGGAGCAGCATGAAAACGGCCAGTGCCAGACCTACGTGTACGATCCCAACGAGGC CTGGAGCCCGCTGGCGCGCATCGACCATATGGCAGCAGGCGAACGGGGCGATGTGTTGTGGTTCAATACCGATCTCAACG GGGCACCGCTAGAGGTAACCGATGAACGCGGCGACATCCGCTGGAGCGGTCAGTACGGCAGCTTTGGTGAAGTGCGTCGG CAGACAGAGGGCTTTACCCGGCTGGCAAAACAGTCTGCCCTGCCCCATCAGCCGCTGCGCTATGCGGGCCAGTATGCGGA CAGCGAAACCGGTCTGCATTACAATCTGTTCCGCTATTACGATCCGCAGGTGGGACGGTTCACGGTTCAGGACCCGATAG GGCTGGAAGGCGGCTGGAACCTGTATCAGTATGCGCCGAACCCGCTGAGTTGGATCGACCCGTTGGGGTTGAATAAGTGT GGGAGCTTTACAAAGAATCCTGACGATATCCATTTCATGCAAAGTTCAATTAAAAATCAAACGGGCGAGCATACCGTTCT CAATAACGCAGCTGCTCTTAAAAACGGTACTCTTAAGCCCACTGATTTACCCGCAATTAAAATTTGGCAAGACTCAAGCG GAAAATTATGGACTCTGGACCACAGGAGACTGGCTGCATTCAAACTGTCAGGGCTGAAAGAAATACCGGTGCAGTGGGCT ACGGAGAAAGAAATTGCTGGCCAAATGTGGAAAATGACTACGAAAACAGATGGAAAAAGTATCATTCTTAAAATGGGTGA TGGTATTAAGAGAGTTATAGGTGGCTAA Protein sequence : MFEAARLGDDIGHSHALAGMIAGTIVGGLIAAAGGIAAGALMIAGIGASCLGVGVLLVGLSIGVGYLTGELATAARDGIA DAGAASMTPKGKITTGSPNVFINSKPAAMATNSIVACKDDGPQQMAEGSSRVYINGLPASRIDDRTTCDAKVMTGSDNVY IGGEPEQTLPIQPEVPEWVYKASDLTLLFAGLAGGVGGAAGKVGALGKLLSKIPGINKIARVACRAGALMTGVAAAGILA RPVDIVSGQKFLSGDDELDFVLPSRLPLRWQRYWRSGNPGDSVLGRGWNLFWETRLERYQDGLVWRASSGDYVSFPLVPK GQRTYCEAEKRWLEHHRDDSWSLYDISGERWHFMPLRDDAPSLPLCLTEPCGNEIQFDWNPDHTLAALTDSAGQRVTCRY ANNRLAGAWLDDDICLVSYAYDDIGQLVTVTGRGGSVRRRFQWCDGLMVAHEDMNGLLSEYRWQEIDGLPRVVAFRHSGG EQLDFEYDFDNGIRRARRDDGVEAHWLIDDDDHVARFTDFDGRQTMLVYRAGELCDVIMPGGAMRCSNWDRYGRMTQEID PVGRRTTYHWFRMTDRVIRTDYPDLSATQAAYDLNVRLLTETDALNNVTTYHYPDDTELLPDSITDATGGVVKLEWNRQG LLTQRTDCSGSVTTFSYDRFGQLVRSVDAEGHVTQREWNDKGQLCAIIHPDGSRETLHWNTQGQLSAWRDPLETEVRWTY NALGLPVSLTDRIGRTRRWHYDARGNLLRLENGNGGDYRFTCDPLGRPLSEIRPDKTSRNMEWNARGFLIGLQENGQPAN DGGIARRWQRFSYDDSGLITQRTTQHAEYHYRRHRSGQLASLVRTPTSDGMALGIEDDEIAFTYDVAGQLLTEAGINGKL DYEWDALGNLTHLTLPGEQQLAWLHYGSGHVSAIRFNQQLVSEFTRDRLHREIRRSQGAREQARQYDSLGRRTMQRSELH SEVVLPEKAILERAFRYSARSELESVSDTLRGDIIYGYDDEGRLLKHYEARQGHSTSHFAYDNADNLAANDDALHALPVT DNRLHHWQNLFMKYDDWGNLVSRRSGLHEQHFTYDAENRLISAKGNGPDGGFTAHYHYDALGRRTRKVVSTQHDRKEVRF LWQGYRLLQEQHENGQCQTYVYDPNEAWSPLARIDHMAAGERGDVLWFNTDLNGAPLEVTDERGDIRWSGQYGSFGEVRR QTEGFTRLAKQSALPHQPLRYAGQYADSETGLHYNLFRYYDPQVGRFTVQDPIGLEGGWNLYQYAPNPLSWIDPLGLNKC GSFTKNPDDIHFMQSSIKNQTGEHTVLNNAAALKNGTLKPTDLPAIKIWQDSSGKLWTLDHRRLAAFKLSGLKEIPVQWA TEKEIAGQMWKMTTKTDGKSIILKMGDGIKRVIGG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YpsIP31758_3692 | YP_001402646.1 | RHS/YD repeat-containing protein | Not tested | YAPI | Protein | 0.0 | 45 |
| api89 | CAF28563.1 | putative membrane-bound sugar-binding protein | Not tested | YAPI | Protein | 0.0 | 45 |
