Gene Information

Name : pagC (PAJ_3265)
Accession : YP_005936141.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Virulence
Product : virulence membrane protein PagC precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3896194 - 3896754 bp
Length : 561 bp
Strand : +
Note : similar to Edwardsiella tarda EIB202, putative virulence-related membrane protein (NCBI: YP_003295691.1) COG: cell wall/membrane/envelope biogenesis subcellular localization as predicted by Psort 2.0: outer membrane

DNA sequence : 
ATGAACAAGGTGATTATTTCCGCTATTTTCTGTGCGCTGCTGAGTGGTGCGGTGCCCGCAGTGGCAAGTCAAACGCTGTC
TGTAGGCTATGCGCAGAGTAAAGTTGAAGATTTTAAAAATATGCCCGGTGTGAATCTGCAATATCGTTATGAGTGGGACT
CGCCGGTTAGCGTAGTGGCCTCTTTCACCACTCTGGAGAACAGTGAGGACAGCAACAGTTCTTTTTTTCAGCGCCATACG
TCCGATCACGTAAGCGCAAAATATTATTCTTTACTGGCGGGGCCGGCATATCGTCTGAATCAACGGGTCAGTGTTTATGC
GCTGGCCGGCTTTTCCCATGCCGCGATGAGCCGCCAGTATCACGGCTATGATTCTCAGGGAATGCCTCAGGACATCCAGT
TTTCGGAGACGACCAATGCGTTGGCTTACGGGGCCGGTATTATCATTAACCCGGTTGATTATCTGTCTGTAACCCTGGGT
TACGAAGGTTCCCGCACCCGGGTTGAAGGAGAGCAACGCGCTGTTAACGGCGTTAATCTGGGGGTGGGTTACCGTTTCTG
A

Protein sequence : 
MNKVIISAIFCALLSGAVPAVASQTLSVGYAQSKVEDFKNMPGVNLQYRYEWDSPVSVVASFTTLENSEDSNSSFFQRHT
SDHVSAKYYSLLAGPAYRLNQRVSVYALAGFSHAAMSRQYHGYDSQGMPQDIQFSETTNALAYGAGIIINPVDYLSVTLG
YEGSRTRVEGEQRAVNGVNLGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 4e-30 47
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 1e-29 47
pagC AGI37348.1 PagC Virulence OI-122 Protein 6e-22 46
pagC AGI37351.1 PagC Virulence OI-122 Protein 4e-22 46
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 2e-30 46
pagC AGI37340.1 PagC Virulence OI-122 Protein 7e-22 44
pagC AGI37347.1 PagC Virulence OI-122 Protein 7e-22 44
pagC AGI37344.1 PagC Virulence OI-122 Protein 3e-21 43
pagC AGI37346.1 PagC Virulence OI-122 Protein 3e-21 43
pagC AGI37343.1 PagC Virulence OI-122 Protein 6e-21 43
pagC AGI37350.1 PagC Virulence OI-122 Protein 3e-21 43
pagC AGI37353.1 PagC Virulence OI-122 Protein 6e-21 43
pagC AGI37341.1 PagC Virulence OI-122 Protein 3e-21 43
pagC AGI37349.1 PagC Virulence OI-122 Protein 3e-21 43
pagC AGI37352.1 PagC Virulence OI-122 Protein 3e-21 43
pagC AGI37337.1 PagC Virulence OI-122 Protein 3e-21 43
pagC AGI37342.1 PagC Virulence OI-122 Protein 3e-21 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pagC YP_005936141.1 virulence membrane protein PagC precursor VFG0442 Protein 2e-21 42