Gene Information

Name : tetD (PAJ_2972)
Accession : YP_005935848.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Resistance
Product : transposon Tn10 TetD protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3559075 - 3559539 bp
Length : 465 bp
Strand : +
Note : similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05731819.1) COG: transcription subcellular localization as predicted by Psort 2.0: cytoplasmic

DNA sequence : 
ATGAATGAGAACAAATACAATGAGAGCGTGATTATTTCTGTTACTGACTGGATTAATAAGAATCTGGACCAGCGCTTAAG
CATTGACGACATTGCTGAAAAGGCGGGTTATTCAAAATGGTATCTACAAAAGTTATTTTCCCGTTATCATAATGAAACGC
TGGCCCATTACATCCGTAGAAAGAAATTAATTGCCTGTATTAATGATTTAAAATACAGCCATGCGCCCATTATCAGCCTG
GCGGTTAAATACCACTTTGAAAGTCAGCAGTCTTTTACCCGCTCCTTCAAGCAGATGATGGGCTGTACGCCTAGCGTATG
CCGTAAAAGCCAGCGACTGAACGTTACCGACAGCAACGCCCATCCTTGCAGCGTATGTAGTAAGGCTGAAAACCCCCCAA
AAAAGAAGTTATTTAGCGGAATAAACGAAACCTTCGGGGTTGGTCATTTAGTCCGCTTGCTTTAA

Protein sequence : 
MNENKYNESVIISVTDWINKNLDQRLSIDDIAEKAGYSKWYLQKLFSRYHNETLAHYIRRKKLIACINDLKYSHAPIISL
AVKYHFESQQSFTRSFKQMMGCTPSVCRKSQRLNVTDSNAHPCSVCSKAENPPKKKLFSGINETFGVGHLVRLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 4e-22 45
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 4e-22 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetD YP_005935848.1 transposon Tn10 TetD protein NC_010558.1.6276025. Protein 2e-22 45
tetD YP_005935848.1 transposon Tn10 TetD protein CP000647.1.gene1624. Protein 8e-20 41
tetD YP_005935848.1 transposon Tn10 TetD protein CP001918.1.gene2033. Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetD YP_005935848.1 transposon Tn10 TetD protein VFG1038 Protein 2e-22 45